miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26745 3' -56 NC_005808.1 + 15418 1.06 0.000765
Target:  5'- cGACCGAUGCACGCGCAACCACAGCUUg -3'
miRNA:   3'- -CUGGCUACGUGCGCGUUGGUGUCGAA- -5'
26745 3' -56 NC_005808.1 + 41215 0.77 0.109032
Target:  5'- aACCGuUGUGCGCGUGGCCGCGGCg- -3'
miRNA:   3'- cUGGCuACGUGCGCGUUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 27005 0.75 0.145589
Target:  5'- uGGCCGAUgGCGCgGUGCAuCCGCAGCg- -3'
miRNA:   3'- -CUGGCUA-CGUG-CGCGUuGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 25161 0.74 0.182551
Target:  5'- -cUCGAUGCugGCGgGGCCACuGCUc -3'
miRNA:   3'- cuGGCUACGugCGCgUUGGUGuCGAa -5'
26745 3' -56 NC_005808.1 + 9377 0.73 0.193009
Target:  5'- cGGCCGcGUGCAuUGUGCAGCCACuGCa- -3'
miRNA:   3'- -CUGGC-UACGU-GCGCGUUGGUGuCGaa -5'
26745 3' -56 NC_005808.1 + 10234 0.73 0.209679
Target:  5'- cGGCCGggGCcucgGCG-GCGACCGCAGCg- -3'
miRNA:   3'- -CUGGCuaCG----UGCgCGUUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 24436 0.73 0.22147
Target:  5'- -gUCGGUGcCGCGCGCGGCCuCGGCg- -3'
miRNA:   3'- cuGGCUAC-GUGCGCGUUGGuGUCGaa -5'
26745 3' -56 NC_005808.1 + 42427 0.72 0.246747
Target:  5'- cGCCGGcauucUGCGCGCgGCAGCUugGGCa- -3'
miRNA:   3'- cUGGCU-----ACGUGCG-CGUUGGugUCGaa -5'
26745 3' -56 NC_005808.1 + 41488 0.72 0.253429
Target:  5'- gGGCCGAUGCGCgacaugccGCGCGA-CACGGCc- -3'
miRNA:   3'- -CUGGCUACGUG--------CGCGUUgGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 27787 0.72 0.253429
Target:  5'- uACaCGAaGCGCGCGCcgcgcAGCCGCAGCa- -3'
miRNA:   3'- cUG-GCUaCGUGCGCG-----UUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 4497 0.71 0.281649
Target:  5'- cGCCgGAUGCGCGCGgcGCCACAggcGCUUg -3'
miRNA:   3'- cUGG-CUACGUGCGCguUGGUGU---CGAA- -5'
26745 3' -56 NC_005808.1 + 25182 0.71 0.281649
Target:  5'- cGGCgGGUugaaugucaugaGCACGCGCGACCGCuggcccGGCUUg -3'
miRNA:   3'- -CUGgCUA------------CGUGCGCGUUGGUG------UCGAA- -5'
26745 3' -56 NC_005808.1 + 23773 0.71 0.289083
Target:  5'- gGGCCGAUGCGC-CGCGGCUACGa--- -3'
miRNA:   3'- -CUGGCUACGUGcGCGUUGGUGUcgaa -5'
26745 3' -56 NC_005808.1 + 32126 0.7 0.304411
Target:  5'- gGGCCGGUGC-UGCGCGAcuuCCAgGGCg- -3'
miRNA:   3'- -CUGGCUACGuGCGCGUU---GGUgUCGaa -5'
26745 3' -56 NC_005808.1 + 13479 0.7 0.312305
Target:  5'- cGGCCuc-GCGCGCGUGACCgGCAGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCGUUGG-UGUCGaa -5'
26745 3' -56 NC_005808.1 + 24543 0.7 0.312305
Target:  5'- uGACCGcGUGguCGCGCAG-CGCGGCg- -3'
miRNA:   3'- -CUGGC-UACguGCGCGUUgGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 39758 0.7 0.328558
Target:  5'- cGCUGGUGCugGCGCcgcugcgcguGGCCGCgAGCa- -3'
miRNA:   3'- cUGGCUACGugCGCG----------UUGGUG-UCGaa -5'
26745 3' -56 NC_005808.1 + 24995 0.7 0.336916
Target:  5'- aGGCCGGUaucGacaACGCGCAGCCGuuUAGCUg -3'
miRNA:   3'- -CUGGCUA---Cg--UGCGCGUUGGU--GUCGAa -5'
26745 3' -56 NC_005808.1 + 39029 0.7 0.345428
Target:  5'- gGAUCGGUGUACGCcCAGCCcGCuGCUg -3'
miRNA:   3'- -CUGGCUACGUGCGcGUUGG-UGuCGAa -5'
26745 3' -56 NC_005808.1 + 21814 0.7 0.345428
Target:  5'- cACCGAcaUGgACGUGCAGCCGC-GCg- -3'
miRNA:   3'- cUGGCU--ACgUGCGCGUUGGUGuCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.