miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26745 3' -56 NC_005808.1 + 34495 0.66 0.522836
Target:  5'- uGGCCGA-GCACGUGCAgaaguacaucgACUACGuGCg- -3'
miRNA:   3'- -CUGGCUaCGUGCGCGU-----------UGGUGU-CGaa -5'
26745 3' -56 NC_005808.1 + 939 0.68 0.447821
Target:  5'- gGGCCGAucUGUccguccuGCGCGguGCCcacgGCAGCUUg -3'
miRNA:   3'- -CUGGCU--ACG-------UGCGCguUGG----UGUCGAA- -5'
26745 3' -56 NC_005808.1 + 16255 0.68 0.448836
Target:  5'- uGGCgGAUGgcguuggccuCGCGCGCGGCCACccggaaGGCUa -3'
miRNA:   3'- -CUGgCUAC----------GUGCGCGUUGGUG------UCGAa -5'
26745 3' -56 NC_005808.1 + 33923 0.68 0.448836
Target:  5'- cACCuggGCGCGCaGCAGCCGCuGCa- -3'
miRNA:   3'- cUGGcuaCGUGCG-CGUUGGUGuCGaa -5'
26745 3' -56 NC_005808.1 + 37962 0.68 0.448836
Target:  5'- uGGCCGAcGCA-GCGUGGCC-CAGCa- -3'
miRNA:   3'- -CUGGCUaCGUgCGCGUUGGuGUCGaa -5'
26745 3' -56 NC_005808.1 + 20856 0.67 0.479887
Target:  5'- uGACCGAcugcacgacgGCGCGCGCcgugauuucGACCACGGa-- -3'
miRNA:   3'- -CUGGCUa---------CGUGCGCG---------UUGGUGUCgaa -5'
26745 3' -56 NC_005808.1 + 23176 0.67 0.479887
Target:  5'- cGGCCcccUGCugGUGCGACaGCAGCa- -3'
miRNA:   3'- -CUGGcu-ACGugCGCGUUGgUGUCGaa -5'
26745 3' -56 NC_005808.1 + 34262 0.67 0.490469
Target:  5'- uGGCaUGAgcacGCACGCGCAACUuuccccgaGCAGCg- -3'
miRNA:   3'- -CUG-GCUa---CGUGCGCGUUGG--------UGUCGaa -5'
26745 3' -56 NC_005808.1 + 3740 0.66 0.522836
Target:  5'- cGCCGGUgguggGCACGuCGguGCCGCcGCUg -3'
miRNA:   3'- cUGGCUA-----CGUGC-GCguUGGUGuCGAa -5'
26745 3' -56 NC_005808.1 + 34987 0.68 0.438735
Target:  5'- -uCCGgcGC-UGCGCGACCACGuGCUg -3'
miRNA:   3'- cuGGCuaCGuGCGCGUUGGUGU-CGAa -5'
26745 3' -56 NC_005808.1 + 4366 0.69 0.36291
Target:  5'- uGCCGGUGCGCGUGaagGCgACGGCc- -3'
miRNA:   3'- cUGGCUACGUGCGCgu-UGgUGUCGaa -5'
26745 3' -56 NC_005808.1 + 39758 0.7 0.328558
Target:  5'- cGCUGGUGCugGCGCcgcugcgcguGGCCGCgAGCa- -3'
miRNA:   3'- cUGGCUACGugCGCG----------UUGGUG-UCGaa -5'
26745 3' -56 NC_005808.1 + 41215 0.77 0.109032
Target:  5'- aACCGuUGUGCGCGUGGCCGCGGCg- -3'
miRNA:   3'- cUGGCuACGUGCGCGUUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 9377 0.73 0.193009
Target:  5'- cGGCCGcGUGCAuUGUGCAGCCACuGCa- -3'
miRNA:   3'- -CUGGC-UACGU-GCGCGUUGGUGuCGaa -5'
26745 3' -56 NC_005808.1 + 24436 0.73 0.22147
Target:  5'- -gUCGGUGcCGCGCGCGGCCuCGGCg- -3'
miRNA:   3'- cuGGCUAC-GUGCGCGUUGGuGUCGaa -5'
26745 3' -56 NC_005808.1 + 42427 0.72 0.246747
Target:  5'- cGCCGGcauucUGCGCGCgGCAGCUugGGCa- -3'
miRNA:   3'- cUGGCU-----ACGUGCG-CGUUGGugUCGaa -5'
26745 3' -56 NC_005808.1 + 27787 0.72 0.253429
Target:  5'- uACaCGAaGCGCGCGCcgcgcAGCCGCAGCa- -3'
miRNA:   3'- cUG-GCUaCGUGCGCG-----UUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 25182 0.71 0.281649
Target:  5'- cGGCgGGUugaaugucaugaGCACGCGCGACCGCuggcccGGCUUg -3'
miRNA:   3'- -CUGgCUA------------CGUGCGCGUUGGUG------UCGAA- -5'
26745 3' -56 NC_005808.1 + 23773 0.71 0.289083
Target:  5'- gGGCCGAUGCGC-CGCGGCUACGa--- -3'
miRNA:   3'- -CUGGCUACGUGcGCGUUGGUGUcgaa -5'
26745 3' -56 NC_005808.1 + 24543 0.7 0.312305
Target:  5'- uGACCGcGUGguCGCGCAG-CGCGGCg- -3'
miRNA:   3'- -CUGGC-UACguGCGCGUUgGUGUCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.