miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26745 3' -56 NC_005808.1 + 391 0.66 0.522836
Target:  5'- uGAgCGcgGCcaGCGCGCGACUguugaGCAGCa- -3'
miRNA:   3'- -CUgGCuaCG--UGCGCGUUGG-----UGUCGaa -5'
26745 3' -56 NC_005808.1 + 819 0.68 0.438735
Target:  5'- uGGCUGGgcuugaGCGCGCGCAGagACAGCg- -3'
miRNA:   3'- -CUGGCUa-----CGUGCGCGUUggUGUCGaa -5'
26745 3' -56 NC_005808.1 + 939 0.68 0.447821
Target:  5'- gGGCCGAucUGUccguccuGCGCGguGCCcacgGCAGCUUg -3'
miRNA:   3'- -CUGGCU--ACG-------UGCGCguUGG----UGUCGAA- -5'
26745 3' -56 NC_005808.1 + 3740 0.66 0.522836
Target:  5'- cGCCGGUgguggGCACGuCGguGCCGCcGCUg -3'
miRNA:   3'- cUGGCUA-----CGUGC-GCguUGGUGuCGAa -5'
26745 3' -56 NC_005808.1 + 4205 0.68 0.399675
Target:  5'- uGGCCGcgaGCACGuCGCGGCUuGCGGCUUg -3'
miRNA:   3'- -CUGGCua-CGUGC-GCGUUGG-UGUCGAA- -5'
26745 3' -56 NC_005808.1 + 4363 0.68 0.409232
Target:  5'- cGGCCGGacgGCAgGCGgAugCGCAGCc- -3'
miRNA:   3'- -CUGGCUa--CGUgCGCgUugGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 4366 0.69 0.36291
Target:  5'- uGCCGGUGCGCGUGaagGCgACGGCc- -3'
miRNA:   3'- cUGGCUACGUGCGCgu-UGgUGUCGaa -5'
26745 3' -56 NC_005808.1 + 4497 0.71 0.281649
Target:  5'- cGCCgGAUGCGCGCGgcGCCACAggcGCUUg -3'
miRNA:   3'- cUGG-CUACGUGCGCguUGGUGU---CGAA- -5'
26745 3' -56 NC_005808.1 + 5392 0.66 0.552646
Target:  5'- cACUGGUGCGCGCcgcgagcaccuucuGCGuacgcuCCACGGCg- -3'
miRNA:   3'- cUGGCUACGUGCG--------------CGUu-----GGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 7255 0.68 0.448836
Target:  5'- gGGCCGAUGU-CGC-CGGCCuuguGCAGCUUc -3'
miRNA:   3'- -CUGGCUACGuGCGcGUUGG----UGUCGAA- -5'
26745 3' -56 NC_005808.1 + 8296 0.66 0.51195
Target:  5'- uGCCGggGCA-GUGCAGCCAgCGGUg- -3'
miRNA:   3'- cUGGCuaCGUgCGCGUUGGU-GUCGaa -5'
26745 3' -56 NC_005808.1 + 9377 0.73 0.193009
Target:  5'- cGGCCGcGUGCAuUGUGCAGCCACuGCa- -3'
miRNA:   3'- -CUGGC-UACGU-GCGCGUUGGUGuCGaa -5'
26745 3' -56 NC_005808.1 + 9675 0.67 0.479887
Target:  5'- uGGCCGAacagccagccgUGCAgGcCGUGGCCGCAGUUc -3'
miRNA:   3'- -CUGGCU-----------ACGUgC-GCGUUGGUGUCGAa -5'
26745 3' -56 NC_005808.1 + 9780 0.66 0.508703
Target:  5'- cGGCUGGUGUaguccgaccggcagACGCGCAGCaC-CAGCg- -3'
miRNA:   3'- -CUGGCUACG--------------UGCGCGUUG-GuGUCGaa -5'
26745 3' -56 NC_005808.1 + 10234 0.73 0.209679
Target:  5'- cGGCCGggGCcucgGCG-GCGACCGCAGCg- -3'
miRNA:   3'- -CUGGCuaCG----UGCgCGUUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 12382 0.69 0.36291
Target:  5'- cGCCGAgugcgUGCGCGUGCucaAGCCcgGCGGCUa -3'
miRNA:   3'- cUGGCU-----ACGUGCGCG---UUGG--UGUCGAa -5'
26745 3' -56 NC_005808.1 + 12636 0.66 0.567185
Target:  5'- aGGCCGucGUGCGC-CGCGACgACAaGCa- -3'
miRNA:   3'- -CUGGC--UACGUGcGCGUUGgUGU-CGaa -5'
26745 3' -56 NC_005808.1 + 13479 0.7 0.312305
Target:  5'- cGGCCuc-GCGCGCGUGACCgGCAGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCGUUGG-UGUCGaa -5'
26745 3' -56 NC_005808.1 + 14032 0.68 0.409232
Target:  5'- uGGCCGAcgUGCGCGcCGCGaugGCCgGCGGCc- -3'
miRNA:   3'- -CUGGCU--ACGUGC-GCGU---UGG-UGUCGaa -5'
26745 3' -56 NC_005808.1 + 14770 0.66 0.526119
Target:  5'- cGGCCGGcgccaccgcgggcaGCGCGCGCGaggacguGCUGCGGCUg -3'
miRNA:   3'- -CUGGCUa-------------CGUGCGCGU-------UGGUGUCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.