miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26748 3' -50.3 NC_005808.1 + 22286 0.66 0.888303
Target:  5'- ---cAGCCCGCAUCgCAAC-CGGcCGCc -3'
miRNA:   3'- uuuaUUGGGCGUGG-GUUGaGCUaGUG- -5'
26748 3' -50.3 NC_005808.1 + 32083 0.66 0.88032
Target:  5'- -cGUGGCCgGCGgUCAGCaguUCGAUCAa -3'
miRNA:   3'- uuUAUUGGgCGUgGGUUG---AGCUAGUg -5'
26748 3' -50.3 NC_005808.1 + 9999 0.66 0.872044
Target:  5'- --uUGACgCGgG-CCAGCUUGGUCACa -3'
miRNA:   3'- uuuAUUGgGCgUgGGUUGAGCUAGUG- -5'
26748 3' -50.3 NC_005808.1 + 42185 0.66 0.863483
Target:  5'- -cGUGGCCCGCgacgugcuGCUCAACagUCGcgCGCu -3'
miRNA:   3'- uuUAUUGGGCG--------UGGGUUG--AGCuaGUG- -5'
26748 3' -50.3 NC_005808.1 + 33782 0.66 0.863483
Target:  5'- --cUGGCCCG-ACCCAGCa-GAUCGg -3'
miRNA:   3'- uuuAUUGGGCgUGGGUUGagCUAGUg -5'
26748 3' -50.3 NC_005808.1 + 41039 0.66 0.863483
Target:  5'- aGGAUAugCC-CAUCCAGC-CGGUCGa -3'
miRNA:   3'- -UUUAUugGGcGUGGGUUGaGCUAGUg -5'
26748 3' -50.3 NC_005808.1 + 28489 0.66 0.863483
Target:  5'- cGAgcAUCCGCucggcauuGCCgAACUCGGUCAUc -3'
miRNA:   3'- uUUauUGGGCG--------UGGgUUGAGCUAGUG- -5'
26748 3' -50.3 NC_005808.1 + 3079 0.66 0.845544
Target:  5'- ---cGAgCCGCACCCAugcccUUCGA-CACg -3'
miRNA:   3'- uuuaUUgGGCGUGGGUu----GAGCUaGUG- -5'
26748 3' -50.3 NC_005808.1 + 41725 0.66 0.845544
Target:  5'- --cUGGCCCuGCugUuCAACUCGGcUCGCa -3'
miRNA:   3'- uuuAUUGGG-CGugG-GUUGAGCU-AGUG- -5'
26748 3' -50.3 NC_005808.1 + 10885 0.66 0.845544
Target:  5'- ---aAGCCCGCGCgCGGCgggcUGGUCAg -3'
miRNA:   3'- uuuaUUGGGCGUGgGUUGa---GCUAGUg -5'
26748 3' -50.3 NC_005808.1 + 18541 0.67 0.806681
Target:  5'- --uUGGCCUG-GCCgAAgUCGAUCACg -3'
miRNA:   3'- uuuAUUGGGCgUGGgUUgAGCUAGUG- -5'
26748 3' -50.3 NC_005808.1 + 33723 0.67 0.806681
Target:  5'- cAAUGauGCCCGCGCCCGcUUCG-UgGCg -3'
miRNA:   3'- uUUAU--UGGGCGUGGGUuGAGCuAgUG- -5'
26748 3' -50.3 NC_005808.1 + 18135 0.68 0.775295
Target:  5'- ---gAACuuGuCGCCCGGCUCGcgCAg -3'
miRNA:   3'- uuuaUUGggC-GUGGGUUGAGCuaGUg -5'
26748 3' -50.3 NC_005808.1 + 11368 0.68 0.764476
Target:  5'- ---cGACCUGCucGCCCGGCaccUCGGUgGCg -3'
miRNA:   3'- uuuaUUGGGCG--UGGGUUG---AGCUAgUG- -5'
26748 3' -50.3 NC_005808.1 + 25582 0.68 0.753502
Target:  5'- -----uCCCGUucACCU-ACUCGGUCACg -3'
miRNA:   3'- uuuauuGGGCG--UGGGuUGAGCUAGUG- -5'
26748 3' -50.3 NC_005808.1 + 7465 0.69 0.731143
Target:  5'- cGAAUGGCCuUGCACCagGACUCGAcCAg -3'
miRNA:   3'- -UUUAUUGG-GCGUGGg-UUGAGCUaGUg -5'
26748 3' -50.3 NC_005808.1 + 5027 0.69 0.70833
Target:  5'- ---cAGCgCCGCgauGCCCcGCUCGAUgGCg -3'
miRNA:   3'- uuuaUUG-GGCG---UGGGuUGAGCUAgUG- -5'
26748 3' -50.3 NC_005808.1 + 32610 0.69 0.70718
Target:  5'- --cUGGCCCGCgucaaggGCCgCGACgccgCGGUCGCu -3'
miRNA:   3'- uuuAUUGGGCG-------UGG-GUUGa---GCUAGUG- -5'
26748 3' -50.3 NC_005808.1 + 33865 0.7 0.661789
Target:  5'- cGGUAGCgCCGCGCCC-GC-CGggCACa -3'
miRNA:   3'- uUUAUUG-GGCGUGGGuUGaGCuaGUG- -5'
26748 3' -50.3 NC_005808.1 + 25264 0.7 0.638275
Target:  5'- ----uGCUCGCGCU--GCUCGGUCACu -3'
miRNA:   3'- uuuauUGGGCGUGGguUGAGCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.