miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 41601 0.69 0.253994
Target:  5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3'
miRNA:   3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 41285 0.68 0.294218
Target:  5'- uGUCGGccUGGUGGCCgucgcccuggGCG-CGGCGGuguGGg -3'
miRNA:   3'- -CGGCC--ACCGCCGG----------UGCaGCCGCUu--CC- -5'
26752 3' -61.1 NC_005808.1 + 41119 0.71 0.17765
Target:  5'- aGCCGGUGGCGGaaGaagaaCGGCGucGAGGa -3'
miRNA:   3'- -CGGCCACCGCCggUgca--GCCGC--UUCC- -5'
26752 3' -61.1 NC_005808.1 + 39503 0.69 0.253994
Target:  5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3'
miRNA:   3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 38590 0.68 0.273514
Target:  5'- cGCUGGUGGcCGG-CGCGUUuugGGCGGAc- -3'
miRNA:   3'- -CGGCCACC-GCCgGUGCAG---CCGCUUcc -5'
26752 3' -61.1 NC_005808.1 + 37024 0.79 0.046411
Target:  5'- -aCGGUGGCGGCCAgCGUUGGCGccGu -3'
miRNA:   3'- cgGCCACCGCCGGU-GCAGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 35729 0.67 0.331398
Target:  5'- -aUGGUGGaCGuGCCgACGU-GGUGggGGg -3'
miRNA:   3'- cgGCCACC-GC-CGG-UGCAgCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 33734 0.69 0.269516
Target:  5'- gGCCGaacGCuaccgcaccguccugGGCUACGUCGGCGAGGa -3'
miRNA:   3'- -CGGCcacCG---------------CCGGUGCAGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 31689 0.68 0.308687
Target:  5'- aCCGGcgGGCaGGUCGCcauucCGGUGGAGGa -3'
miRNA:   3'- cGGCCa-CCG-CCGGUGca---GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 30158 0.69 0.245898
Target:  5'- cGUCGGacaucagcggcaguUGGC-GCCA-GUCGGUGAAGGc -3'
miRNA:   3'- -CGGCC--------------ACCGcCGGUgCAGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 29364 0.66 0.389048
Target:  5'- cGCCGGUGGCcuuGCCccagcccucggAC-UCGGCGcgguAGGc -3'
miRNA:   3'- -CGGCCACCGc--CGG-----------UGcAGCCGCu---UCC- -5'
26752 3' -61.1 NC_005808.1 + 29327 0.67 0.331398
Target:  5'- aGgCGGUGGCGGUCGC--CGGCcAAGu -3'
miRNA:   3'- -CgGCCACCGCCGGUGcaGCCGcUUCc -5'
26752 3' -61.1 NC_005808.1 + 28561 0.66 0.397804
Target:  5'- cGCCGGccaucGCGGCgcgCACGUCGGCcaccGGc -3'
miRNA:   3'- -CGGCCac---CGCCG---GUGCAGCCGcuu-CC- -5'
26752 3' -61.1 NC_005808.1 + 27500 0.67 0.331398
Target:  5'- uGCCGGcGGCcucGGCCGCcagcuucUCGGCGcggucGGGg -3'
miRNA:   3'- -CGGCCaCCG---CCGGUGc------AGCCGCu----UCC- -5'
26752 3' -61.1 NC_005808.1 + 27119 0.7 0.206986
Target:  5'- uGCCGGUGGCgaugcaacuggacGGCaGCuUCGGCcAAGGg -3'
miRNA:   3'- -CGGCCACCG-------------CCGgUGcAGCCGcUUCC- -5'
26752 3' -61.1 NC_005808.1 + 26536 0.69 0.241627
Target:  5'- cGCCGcGcgcGGCGGCCACGUgcGCGAAcuGGc -3'
miRNA:   3'- -CGGC-Ca--CCGCCGGUGCAgcCGCUU--CC- -5'
26752 3' -61.1 NC_005808.1 + 26404 0.66 0.397804
Target:  5'- uUCGGgcgaaUGGCGcGUgGCGUCGGUGAAc- -3'
miRNA:   3'- cGGCC-----ACCGC-CGgUGCAGCCGCUUcc -5'
26752 3' -61.1 NC_005808.1 + 26269 0.67 0.339236
Target:  5'- cGCCGGccUGGuCGGCuCGCGcaucgCGcGCGAuGGa -3'
miRNA:   3'- -CGGCC--ACC-GCCG-GUGCa----GC-CGCUuCC- -5'
26752 3' -61.1 NC_005808.1 + 26050 0.67 0.316123
Target:  5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3'
miRNA:   3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5'
26752 3' -61.1 NC_005808.1 + 25078 0.69 0.241627
Target:  5'- -gCGGUGGCGcGCUAUaucagcUUGGUGAAGGa -3'
miRNA:   3'- cgGCCACCGC-CGGUGc-----AGCCGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.