miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 591 0.66 0.397804
Target:  5'- uGCuCGG-GGUagugcuucGCCAUGUCGGCGAugauGGc -3'
miRNA:   3'- -CG-GCCaCCGc-------CGGUGCAGCCGCUu---CC- -5'
26752 3' -61.1 NC_005808.1 + 1348 0.67 0.355314
Target:  5'- aGCCguGGUcGGCGGCCuuGCGcaucCGGCGAc-- -3'
miRNA:   3'- -CGG--CCA-CCGCCGG--UGCa---GCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 1876 0.68 0.300663
Target:  5'- aGCCcGUGGCcggcgcuGGCCGgGUgGGCGAacagcagcGGGa -3'
miRNA:   3'- -CGGcCACCG-------CCGGUgCAgCCGCU--------UCC- -5'
26752 3' -61.1 NC_005808.1 + 2823 0.72 0.143797
Target:  5'- gGCCaGGUGcucGCGGCCACGcgcagCGGCGccagcaccagcGAGGg -3'
miRNA:   3'- -CGG-CCAC---CGCCGGUGCa----GCCGC-----------UUCC- -5'
26752 3' -61.1 NC_005808.1 + 3740 0.83 0.024864
Target:  5'- cGCCGGUGGUGGgCACGUCGGUGccgccgcuGGa -3'
miRNA:   3'- -CGGCCACCGCCgGUGCAGCCGCuu------CC- -5'
26752 3' -61.1 NC_005808.1 + 3833 0.69 0.266877
Target:  5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3'
miRNA:   3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 4178 0.68 0.308687
Target:  5'- aGCCGGccgccucgaUGGCGGgCAUGUUGGCc---- -3'
miRNA:   3'- -CGGCC---------ACCGCCgGUGCAGCCGcuucc -5'
26752 3' -61.1 NC_005808.1 + 4274 0.72 0.147683
Target:  5'- cGCCGGcaUGGUgauGGCCGUGUCGGCGGu-- -3'
miRNA:   3'- -CGGCC--ACCG---CCGGUGCAGCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 4801 0.67 0.355314
Target:  5'- cGCCGGcUGGC-GCUGCGggauugcuggcCGGCGAcAGGu -3'
miRNA:   3'- -CGGCC-ACCGcCGGUGCa----------GCCGCU-UCC- -5'
26752 3' -61.1 NC_005808.1 + 5146 0.71 0.17765
Target:  5'- uGCCGcgcaGGCGGCCGuCGcugcucacgcccUUGGCGAGGGu -3'
miRNA:   3'- -CGGCca--CCGCCGGU-GC------------AGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 6345 0.67 0.331398
Target:  5'- cGCCcuggugcgucugGGUGGCgaaccGGcCCACGUCGGCaaucAGGc -3'
miRNA:   3'- -CGG------------CCACCG-----CC-GGUGCAGCCGcu--UCC- -5'
26752 3' -61.1 NC_005808.1 + 7731 0.66 0.38042
Target:  5'- cGCaCGcucGGCGGCCGgcuugcUGUUGGCGAcgaAGGa -3'
miRNA:   3'- -CG-GCca-CCGCCGGU------GCAGCCGCU---UCC- -5'
26752 3' -61.1 NC_005808.1 + 8219 0.73 0.132697
Target:  5'- gGCCaguucGUGcGCGGCCGugcccuCGUCGGCGAAGu -3'
miRNA:   3'- -CGGc----CAC-CGCCGGU------GCAGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 9310 0.75 0.08819
Target:  5'- cUCGGcgaccUGGCGGCgCACGUCGGCGcggcGGGc -3'
miRNA:   3'- cGGCC-----ACCGCCG-GUGCAGCCGCu---UCC- -5'
26752 3' -61.1 NC_005808.1 + 9567 0.66 0.397804
Target:  5'- cGCCGGUGGCGaGCauccggucgaaCACGUUGcGCa---- -3'
miRNA:   3'- -CGGCCACCGC-CG-----------GUGCAGC-CGcuucc -5'
26752 3' -61.1 NC_005808.1 + 10216 0.67 0.347209
Target:  5'- uGCUGGcuuccugcugGGCGGCCGgGgccUCGGCGgcGa -3'
miRNA:   3'- -CGGCCa---------CCGCCGGUgC---AGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 10498 0.65 0.412072
Target:  5'- gGCCaGGgcguugagcaacGCGGCCGUGUUGGCGggGc -3'
miRNA:   3'- -CGG-CCac----------CGCCGGUGCAGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 10739 0.72 0.151663
Target:  5'- uGCaCGGcgagGGCGuGCCGCaggaauucuucGUCGGUGAGGGu -3'
miRNA:   3'- -CG-GCCa---CCGC-CGGUG-----------CAGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 10928 0.66 0.38818
Target:  5'- cGCCGGUuugcagggccucgGGCaGUUGCG-CGGCGAcagccGGGg -3'
miRNA:   3'- -CGGCCA-------------CCGcCGGUGCaGCCGCU-----UCC- -5'
26752 3' -61.1 NC_005808.1 + 13306 0.68 0.308687
Target:  5'- cGCCGG-GGcCGGCguUGUaggCGGCGuAGGc -3'
miRNA:   3'- -CGGCCaCC-GCCGguGCA---GCCGCuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.