Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 13448 | 0.69 | 0.266877 |
Target: 5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3' miRNA: 3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 13562 | 0.69 | 0.266877 |
Target: 5'- cGCCGGUGGguaucgaccUGGCCgaaGCG-CGGCGccuGGu -3' miRNA: 3'- -CGGCCACC---------GCCGG---UGCaGCCGCuu-CC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 13919 | 0.69 | 0.247747 |
Target: 5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3' miRNA: 3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 14026 | 0.7 | 0.2184 |
Target: 5'- uGCCGGUGGCcgacgugcGcGCCGCGauggcCGGCGGccgcaAGGu -3' miRNA: 3'- -CGGCCACCG--------C-CGGUGCa----GCCGCU-----UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 14351 | 0.66 | 0.406685 |
Target: 5'- uGCUGGUucgcGGUGuCCugGaaGGCGggGGc -3' miRNA: 3'- -CGGCCA----CCGCcGGugCagCCGCuuCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 14908 | 0.69 | 0.247747 |
Target: 5'- uGCCGGcGcGCGGCC-UGUauuccaagaccaCGGUGGAGGu -3' miRNA: 3'- -CGGCCaC-CGCCGGuGCA------------GCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 15376 | 0.69 | 0.266877 |
Target: 5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3' miRNA: 3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 17249 | 0.66 | 0.395164 |
Target: 5'- gGCCGGcuaugcgaacUGGcCGGCCugGacaauccCGGCGAcgagcgccgguggcAGGg -3' miRNA: 3'- -CGGCC----------ACC-GCCGGugCa------GCCGCU--------------UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 18398 | 1.11 | 0.00017 |
Target: 5'- cGCCGGUGGCGGCCACGUCGGCGAAGGu -3' miRNA: 3'- -CGGCCACCGCCGGUGCAGCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 18563 | 0.76 | 0.085791 |
Target: 5'- cGUCGGUGGaGGCCGCGcucgCGGUGAcGGc -3' miRNA: 3'- -CGGCCACCgCCGGUGCa---GCCGCUuCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 19040 | 0.66 | 0.363552 |
Target: 5'- cCUGGUaGCGGCCGCcggCGGCGucGa -3' miRNA: 3'- cGGCCAcCGCCGGUGca-GCCGCuuCc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 19499 | 0.69 | 0.266877 |
Target: 5'- cGCCGuG-GGC-GCCGcCGUUGGCGucGGg -3' miRNA: 3'- -CGGC-CaCCGcCGGU-GCAGCCGCuuCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 21591 | 0.76 | 0.082081 |
Target: 5'- uUCGGUGGCGGUCAucugcggauuggugcCGUUGGCGAgcaugAGGa -3' miRNA: 3'- cGGCCACCGCCGGU---------------GCAGCCGCU-----UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 23184 | 0.7 | 0.229766 |
Target: 5'- uGCUGGUgcgacagcagcaGGuCGGCCuCGUCGGUGAAu- -3' miRNA: 3'- -CGGCCA------------CC-GCCGGuGCAGCCGCUUcc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 23737 | 0.68 | 0.294218 |
Target: 5'- cUCGGUGGCGcgcagcagcGCCAUGcCGGCGccaccGGGc -3' miRNA: 3'- cGGCCACCGC---------CGGUGCaGCCGCu----UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 24003 | 0.67 | 0.316123 |
Target: 5'- aCUGGcgaaGGUGGgCGCGUCGGCcaauucagcGAAGGc -3' miRNA: 3'- cGGCCa---CCGCCgGUGCAGCCG---------CUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 24298 | 0.69 | 0.235634 |
Target: 5'- cGUgGG-GGCGGUgAgGUCGGCGAgcagccgcGGGu -3' miRNA: 3'- -CGgCCaCCGCCGgUgCAGCCGCU--------UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 24522 | 0.67 | 0.330621 |
Target: 5'- cGCCGGcuucGGCGGCCcagcacgcaccccGCGcCGGU-AAGGc -3' miRNA: 3'- -CGGCCa---CCGCCGG-------------UGCaGCCGcUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 25078 | 0.69 | 0.241627 |
Target: 5'- -gCGGUGGCGcGCUAUaucagcUUGGUGAAGGa -3' miRNA: 3'- cgGCCACCGC-CGGUGc-----AGCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 26050 | 0.67 | 0.316123 |
Target: 5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3' miRNA: 3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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