Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 18563 | 0.76 | 0.085791 |
Target: 5'- cGUCGGUGGaGGCCGCGcucgCGGUGAcGGc -3' miRNA: 3'- -CGGCCACCgCCGGUGCa---GCCGCUuCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 9310 | 0.75 | 0.08819 |
Target: 5'- cUCGGcgaccUGGCGGCgCACGUCGGCGcggcGGGc -3' miRNA: 3'- cGGCC-----ACCGCCG-GUGCAGCCGCu---UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 4274 | 0.72 | 0.147683 |
Target: 5'- cGCCGGcaUGGUgauGGCCGUGUCGGCGGu-- -3' miRNA: 3'- -CGGCC--ACCG---CCGGUGCAGCCGCUucc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 41119 | 0.71 | 0.17765 |
Target: 5'- aGCCGGUGGCGGaaGaagaaCGGCGucGAGGa -3' miRNA: 3'- -CGGCCACCGCCggUgca--GCCGC--UUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 23184 | 0.7 | 0.229766 |
Target: 5'- uGCUGGUgcgacagcagcaGGuCGGCCuCGUCGGUGAAu- -3' miRNA: 3'- -CGGCCA------------CC-GCCGGuGCAGCCGCUUcc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 24298 | 0.69 | 0.235634 |
Target: 5'- cGUgGG-GGCGGUgAgGUCGGCGAgcagccgcGGGu -3' miRNA: 3'- -CGgCCaCCGCCGgUgCAGCCGCU--------UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 15376 | 0.69 | 0.266877 |
Target: 5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3' miRNA: 3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 13448 | 0.69 | 0.266877 |
Target: 5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3' miRNA: 3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 3833 | 0.69 | 0.266877 |
Target: 5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3' miRNA: 3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 41601 | 0.69 | 0.253994 |
Target: 5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3' miRNA: 3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 39503 | 0.69 | 0.253994 |
Target: 5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3' miRNA: 3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 30158 | 0.69 | 0.245898 |
Target: 5'- cGUCGGacaucagcggcaguUGGC-GCCA-GUCGGUGAAGGc -3' miRNA: 3'- -CGGCC--------------ACCGcCGGUgCAGCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 25078 | 0.69 | 0.241627 |
Target: 5'- -gCGGUGGCGcGCUAUaucagcUUGGUGAAGGa -3' miRNA: 3'- cgGCCACCGC-CGGUGc-----AGCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 14026 | 0.7 | 0.2184 |
Target: 5'- uGCCGGUGGCcgacgugcGcGCCGCGauggcCGGCGGccgcaAGGu -3' miRNA: 3'- -CGGCCACCG--------C-CGGUGCa----GCCGCU-----UCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 27119 | 0.7 | 0.206986 |
Target: 5'- uGCCGGUGGCgaugcaacuggacGGCaGCuUCGGCcAAGGg -3' miRNA: 3'- -CGGCCACCG-------------CCGgUGcAGCCGcUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 5146 | 0.71 | 0.17765 |
Target: 5'- uGCCGcgcaGGCGGCCGuCGcugcucacgcccUUGGCGAGGGu -3' miRNA: 3'- -CGGCca--CCGCCGGU-GC------------AGCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 10739 | 0.72 | 0.151663 |
Target: 5'- uGCaCGGcgagGGCGuGCCGCaggaauucuucGUCGGUGAGGGu -3' miRNA: 3'- -CG-GCCa---CCGC-CGGUG-----------CAGCCGCUUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 2823 | 0.72 | 0.143797 |
Target: 5'- gGCCaGGUGcucGCGGCCACGcgcagCGGCGccagcaccagcGAGGg -3' miRNA: 3'- -CGG-CCAC---CGCCGGUGCa----GCCGC-----------UUCC- -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 8219 | 0.73 | 0.132697 |
Target: 5'- gGCCaguucGUGcGCGGCCGugcccuCGUCGGCGAAGu -3' miRNA: 3'- -CGGc----CAC-CGCCGGU------GCAGCCGCUUCc -5' |
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26752 | 3' | -61.1 | NC_005808.1 | + | 10498 | 0.65 | 0.412072 |
Target: 5'- gGCCaGGgcguugagcaacGCGGCCGUGUUGGCGggGc -3' miRNA: 3'- -CGG-CCac----------CGCCGGUGCAGCCGCuuCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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