miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 29327 0.67 0.331398
Target:  5'- aGgCGGUGGCGGUCGC--CGGCcAAGu -3'
miRNA:   3'- -CgGCCACCGCCGGUGcaGCCGcUUCc -5'
26752 3' -61.1 NC_005808.1 + 3833 0.69 0.266877
Target:  5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3'
miRNA:   3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 13448 0.69 0.266877
Target:  5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3'
miRNA:   3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 15376 0.69 0.266877
Target:  5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3'
miRNA:   3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 33734 0.69 0.269516
Target:  5'- gGCCGaacGCuaccgcaccguccugGGCUACGUCGGCGAGGa -3'
miRNA:   3'- -CGGCcacCG---------------CCGGUGCAGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 23737 0.68 0.294218
Target:  5'- cUCGGUGGCGcgcagcagcGCCAUGcCGGCGccaccGGGc -3'
miRNA:   3'- cGGCCACCGC---------CGGUGCaGCCGCu----UCC- -5'
26752 3' -61.1 NC_005808.1 + 13306 0.68 0.308687
Target:  5'- cGCCGG-GGcCGGCguUGUaggCGGCGuAGGc -3'
miRNA:   3'- -CGGCCaCC-GCCGguGCA---GCCGCuUCC- -5'
26752 3' -61.1 NC_005808.1 + 24003 0.67 0.316123
Target:  5'- aCUGGcgaaGGUGGgCGCGUCGGCcaauucagcGAAGGc -3'
miRNA:   3'- cGGCCa---CCGCCgGUGCAGCCG---------CUUCC- -5'
26752 3' -61.1 NC_005808.1 + 26050 0.67 0.316123
Target:  5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3'
miRNA:   3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5'
26752 3' -61.1 NC_005808.1 + 41601 0.69 0.253994
Target:  5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3'
miRNA:   3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 39503 0.69 0.253994
Target:  5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3'
miRNA:   3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 30158 0.69 0.245898
Target:  5'- cGUCGGacaucagcggcaguUGGC-GCCA-GUCGGUGAAGGc -3'
miRNA:   3'- -CGGCC--------------ACCGcCGGUgCAGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 3740 0.83 0.024864
Target:  5'- cGCCGGUGGUGGgCACGUCGGUGccgccgcuGGa -3'
miRNA:   3'- -CGGCCACCGCCgGUGCAGCCGCuu------CC- -5'
26752 3' -61.1 NC_005808.1 + 21591 0.76 0.082081
Target:  5'- uUCGGUGGCGGUCAucugcggauuggugcCGUUGGCGAgcaugAGGa -3'
miRNA:   3'- cGGCCACCGCCGGU---------------GCAGCCGCU-----UCC- -5'
26752 3' -61.1 NC_005808.1 + 18563 0.76 0.085791
Target:  5'- cGUCGGUGGaGGCCGCGcucgCGGUGAcGGc -3'
miRNA:   3'- -CGGCCACCgCCGGUGCa---GCCGCUuCC- -5'
26752 3' -61.1 NC_005808.1 + 9310 0.75 0.08819
Target:  5'- cUCGGcgaccUGGCGGCgCACGUCGGCGcggcGGGc -3'
miRNA:   3'- cGGCC-----ACCGCCG-GUGCAGCCGCu---UCC- -5'
26752 3' -61.1 NC_005808.1 + 4274 0.72 0.147683
Target:  5'- cGCCGGcaUGGUgauGGCCGUGUCGGCGGu-- -3'
miRNA:   3'- -CGGCC--ACCG---CCGGUGCAGCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 41119 0.71 0.17765
Target:  5'- aGCCGGUGGCGGaaGaagaaCGGCGucGAGGa -3'
miRNA:   3'- -CGGCCACCGCCggUgca--GCCGC--UUCC- -5'
26752 3' -61.1 NC_005808.1 + 23184 0.7 0.229766
Target:  5'- uGCUGGUgcgacagcagcaGGuCGGCCuCGUCGGUGAAu- -3'
miRNA:   3'- -CGGCCA------------CC-GCCGGuGCAGCCGCUUcc -5'
26752 3' -61.1 NC_005808.1 + 24298 0.69 0.235634
Target:  5'- cGUgGG-GGCGGUgAgGUCGGCGAgcagccgcGGGu -3'
miRNA:   3'- -CGgCCaCCGCCGgUgCAGCCGCU--------UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.