miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 37024 0.79 0.046411
Target:  5'- -aCGGUGGCGGCCAgCGUUGGCGccGu -3'
miRNA:   3'- cgGCCACCGCCGGU-GCAGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 31689 0.68 0.308687
Target:  5'- aCCGGcgGGCaGGUCGCcauucCGGUGGAGGa -3'
miRNA:   3'- cGGCCa-CCG-CCGGUGca---GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 35729 0.67 0.331398
Target:  5'- -aUGGUGGaCGuGCCgACGU-GGUGggGGg -3'
miRNA:   3'- cgGCCACC-GC-CGG-UGCAgCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 10498 0.65 0.412072
Target:  5'- gGCCaGGgcguugagcaacGCGGCCGUGUUGGCGggGc -3'
miRNA:   3'- -CGG-CCac----------CGCCGGUGCAGCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 5146 0.71 0.17765
Target:  5'- uGCCGcgcaGGCGGCCGuCGcugcucacgcccUUGGCGAGGGu -3'
miRNA:   3'- -CGGCca--CCGCCGGU-GC------------AGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 27119 0.7 0.206986
Target:  5'- uGCCGGUGGCgaugcaacuggacGGCaGCuUCGGCcAAGGg -3'
miRNA:   3'- -CGGCCACCG-------------CCGgUGcAGCCGcUUCC- -5'
26752 3' -61.1 NC_005808.1 + 25078 0.69 0.241627
Target:  5'- -gCGGUGGCGcGCUAUaucagcUUGGUGAAGGa -3'
miRNA:   3'- cgGCCACCGC-CGGUGc-----AGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 26536 0.69 0.241627
Target:  5'- cGCCGcGcgcGGCGGCCACGUgcGCGAAcuGGc -3'
miRNA:   3'- -CGGC-Ca--CCGCCGGUGCAgcCGCUU--CC- -5'
26752 3' -61.1 NC_005808.1 + 13562 0.69 0.266877
Target:  5'- cGCCGGUGGguaucgaccUGGCCgaaGCG-CGGCGccuGGu -3'
miRNA:   3'- -CGGCCACC---------GCCGG---UGCaGCCGCuu-CC- -5'
26752 3' -61.1 NC_005808.1 + 4178 0.68 0.308687
Target:  5'- aGCCGGccgccucgaUGGCGGgCAUGUUGGCc---- -3'
miRNA:   3'- -CGGCC---------ACCGCCgGUGCAGCCGcuucc -5'
26752 3' -61.1 NC_005808.1 + 38590 0.68 0.273514
Target:  5'- cGCUGGUGGcCGG-CGCGUUuugGGCGGAc- -3'
miRNA:   3'- -CGGCCACC-GCCgGUGCAG---CCGCUUcc -5'
26752 3' -61.1 NC_005808.1 + 14908 0.69 0.247747
Target:  5'- uGCCGGcGcGCGGCC-UGUauuccaagaccaCGGUGGAGGu -3'
miRNA:   3'- -CGGCCaC-CGCCGGuGCA------------GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 8219 0.73 0.132697
Target:  5'- gGCCaguucGUGcGCGGCCGugcccuCGUCGGCGAAGu -3'
miRNA:   3'- -CGGc----CAC-CGCCGGU------GCAGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 41285 0.68 0.294218
Target:  5'- uGUCGGccUGGUGGCCgucgcccuggGCG-CGGCGGuguGGg -3'
miRNA:   3'- -CGGCC--ACCGCCGG----------UGCaGCCGCUu--CC- -5'
26752 3' -61.1 NC_005808.1 + 2823 0.72 0.143797
Target:  5'- gGCCaGGUGcucGCGGCCACGcgcagCGGCGccagcaccagcGAGGg -3'
miRNA:   3'- -CGG-CCAC---CGCCGGUGCa----GCCGC-----------UUCC- -5'
26752 3' -61.1 NC_005808.1 + 13919 0.69 0.247747
Target:  5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3'
miRNA:   3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 1876 0.68 0.300663
Target:  5'- aGCCcGUGGCcggcgcuGGCCGgGUgGGCGAacagcagcGGGa -3'
miRNA:   3'- -CGGcCACCG-------CCGGUgCAgCCGCU--------UCC- -5'
26752 3' -61.1 NC_005808.1 + 24522 0.67 0.330621
Target:  5'- cGCCGGcuucGGCGGCCcagcacgcaccccGCGcCGGU-AAGGc -3'
miRNA:   3'- -CGGCCa---CCGCCGG-------------UGCaGCCGcUUCC- -5'
26752 3' -61.1 NC_005808.1 + 10739 0.72 0.151663
Target:  5'- uGCaCGGcgagGGCGuGCCGCaggaauucuucGUCGGUGAGGGu -3'
miRNA:   3'- -CG-GCCa---CCGC-CGGUG-----------CAGCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 14026 0.7 0.2184
Target:  5'- uGCCGGUGGCcgacgugcGcGCCGCGauggcCGGCGGccgcaAGGu -3'
miRNA:   3'- -CGGCCACCG--------C-CGGUGCa----GCCGCU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.