miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 26050 0.67 0.316123
Target:  5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3'
miRNA:   3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5'
26752 3' -61.1 NC_005808.1 + 24003 0.67 0.316123
Target:  5'- aCUGGcgaaGGUGGgCGCGUCGGCcaauucagcGAAGGc -3'
miRNA:   3'- cGGCCa---CCGCCgGUGCAGCCG---------CUUCC- -5'
26752 3' -61.1 NC_005808.1 + 13306 0.68 0.308687
Target:  5'- cGCCGG-GGcCGGCguUGUaggCGGCGuAGGc -3'
miRNA:   3'- -CGGCCaCC-GCCGguGCA---GCCGCuUCC- -5'
26752 3' -61.1 NC_005808.1 + 4178 0.68 0.308687
Target:  5'- aGCCGGccgccucgaUGGCGGgCAUGUUGGCc---- -3'
miRNA:   3'- -CGGCC---------ACCGCCgGUGCAGCCGcuucc -5'
26752 3' -61.1 NC_005808.1 + 31689 0.68 0.308687
Target:  5'- aCCGGcgGGCaGGUCGCcauucCGGUGGAGGa -3'
miRNA:   3'- cGGCCa-CCG-CCGGUGca---GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 1876 0.68 0.300663
Target:  5'- aGCCcGUGGCcggcgcuGGCCGgGUgGGCGAacagcagcGGGa -3'
miRNA:   3'- -CGGcCACCG-------CCGGUgCAgCCGCU--------UCC- -5'
26752 3' -61.1 NC_005808.1 + 23737 0.68 0.294218
Target:  5'- cUCGGUGGCGcgcagcagcGCCAUGcCGGCGccaccGGGc -3'
miRNA:   3'- cGGCCACCGC---------CGGUGCaGCCGCu----UCC- -5'
26752 3' -61.1 NC_005808.1 + 41285 0.68 0.294218
Target:  5'- uGUCGGccUGGUGGCCgucgcccuggGCG-CGGCGGuguGGg -3'
miRNA:   3'- -CGGCC--ACCGCCGG----------UGCaGCCGCUu--CC- -5'
26752 3' -61.1 NC_005808.1 + 38590 0.68 0.273514
Target:  5'- cGCUGGUGGcCGG-CGCGUUuugGGCGGAc- -3'
miRNA:   3'- -CGGCCACC-GCCgGUGCAG---CCGCUUcc -5'
26752 3' -61.1 NC_005808.1 + 33734 0.69 0.269516
Target:  5'- gGCCGaacGCuaccgcaccguccugGGCUACGUCGGCGAGGa -3'
miRNA:   3'- -CGGCcacCG---------------CCGGUGCAGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 19499 0.69 0.266877
Target:  5'- cGCCGuG-GGC-GCCGcCGUUGGCGucGGg -3'
miRNA:   3'- -CGGC-CaCCGcCGGU-GCAGCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 3833 0.69 0.266877
Target:  5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3'
miRNA:   3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 13448 0.69 0.266877
Target:  5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3'
miRNA:   3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5'
26752 3' -61.1 NC_005808.1 + 13562 0.69 0.266877
Target:  5'- cGCCGGUGGguaucgaccUGGCCgaaGCG-CGGCGccuGGu -3'
miRNA:   3'- -CGGCCACC---------GCCGG---UGCaGCCGCuu-CC- -5'
26752 3' -61.1 NC_005808.1 + 15376 0.69 0.266877
Target:  5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3'
miRNA:   3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 39503 0.69 0.253994
Target:  5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3'
miRNA:   3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 41601 0.69 0.253994
Target:  5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3'
miRNA:   3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 13919 0.69 0.247747
Target:  5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3'
miRNA:   3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 14908 0.69 0.247747
Target:  5'- uGCCGGcGcGCGGCC-UGUauuccaagaccaCGGUGGAGGu -3'
miRNA:   3'- -CGGCCaC-CGCCGGuGCA------------GCCGCUUCC- -5'
26752 3' -61.1 NC_005808.1 + 30158 0.69 0.245898
Target:  5'- cGUCGGacaucagcggcaguUGGC-GCCA-GUCGGUGAAGGc -3'
miRNA:   3'- -CGGCC--------------ACCGcCGGUgCAGCCGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.