miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 5' -59.5 NC_005808.1 + 33305 0.71 0.193377
Target:  5'- uCGCCGAGGAAGUcaauGCGCa--GCCgGUg -3'
miRNA:   3'- uGCGGUUCCUUCA----CGCGgugCGGgCG- -5'
26758 5' -59.5 NC_005808.1 + 35848 0.71 0.203382
Target:  5'- uCGCCAAGGAaaAGUgggGCGCCaaggccgACGCCgUGCu -3'
miRNA:   3'- uGCGGUUCCU--UCA---CGCGG-------UGCGG-GCG- -5'
26758 5' -59.5 NC_005808.1 + 19058 0.7 0.213834
Target:  5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3'
miRNA:   3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 357 0.7 0.214961
Target:  5'- uCGCCGAccauccGGGUGUGCUugGCCUGCc -3'
miRNA:   3'- uGCGGUUcc----UUCACGCGGugCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 23468 0.7 0.214961
Target:  5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3'
miRNA:   3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32886 0.7 0.22067
Target:  5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3'
miRNA:   3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5'
26758 5' -59.5 NC_005808.1 + 24466 0.7 0.226509
Target:  5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3'
miRNA:   3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 29090 0.7 0.230673
Target:  5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3'
miRNA:   3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 24119 0.7 0.232478
Target:  5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3'
miRNA:   3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5'
26758 5' -59.5 NC_005808.1 + 12715 0.7 0.238578
Target:  5'- cAUGCCGGGGggGgggugGUGCUAgaccCGUUCGCa -3'
miRNA:   3'- -UGCGGUUCCuuCa----CGCGGU----GCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 8295 0.7 0.238578
Target:  5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3'
miRNA:   3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5'
26758 5' -59.5 NC_005808.1 + 34443 0.7 0.238578
Target:  5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3'
miRNA:   3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 4570 0.7 0.238578
Target:  5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3'
miRNA:   3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5'
26758 5' -59.5 NC_005808.1 + 8173 0.7 0.244812
Target:  5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3'
miRNA:   3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 32470 0.69 0.251181
Target:  5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3'
miRNA:   3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5'
26758 5' -59.5 NC_005808.1 + 33700 0.69 0.251181
Target:  5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3'
miRNA:   3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 35370 0.69 0.271107
Target:  5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3'
miRNA:   3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5'
26758 5' -59.5 NC_005808.1 + 29337 0.69 0.271107
Target:  5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3'
miRNA:   3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5'
26758 5' -59.5 NC_005808.1 + 10750 0.69 0.271107
Target:  5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3'
miRNA:   3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5'
26758 5' -59.5 NC_005808.1 + 35249 0.69 0.278026
Target:  5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3'
miRNA:   3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.