miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26760 3' -54.4 NC_005808.1 + 24457 1.09 0.000895
Target:  5'- gGCGACAUUGACGCCGACGACCUGCUGc -3'
miRNA:   3'- -CGCUGUAACUGCGGCUGCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 9176 0.8 0.111167
Target:  5'- aGCGACAacUUGGCGCCGucgacguUGGCCUGCUc -3'
miRNA:   3'- -CGCUGU--AACUGCGGCu------GCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 31497 0.8 0.114405
Target:  5'- cUGACAUaccuUGcCGCCGGCGugCUGCUGg -3'
miRNA:   3'- cGCUGUA----ACuGCGGCUGCugGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 39535 0.79 0.124654
Target:  5'- uGCGGCucgGGCGCuUGACGugCUGCUGa -3'
miRNA:   3'- -CGCUGuaaCUGCG-GCUGCugGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 11010 0.78 0.160701
Target:  5'- aGCG-UAUUGGCGUCGAUGAacaCCUGCUGc -3'
miRNA:   3'- -CGCuGUAACUGCGGCUGCU---GGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 40152 0.77 0.189712
Target:  5'- uGCaACAUcgUGGCGCCGAucuucgaggcCGGCCUGCUGc -3'
miRNA:   3'- -CGcUGUA--ACUGCGGCU----------GCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 34605 0.76 0.194974
Target:  5'- gGC-ACGUccGACGCCGugGugCUGCUGc -3'
miRNA:   3'- -CGcUGUAa-CUGCGGCugCugGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 37276 0.76 0.21153
Target:  5'- aGCGugGUauccGugGCCGGCGACCUGg-- -3'
miRNA:   3'- -CGCugUAa---CugCGGCUGCUGGACgac -5'
26760 3' -54.4 NC_005808.1 + 6745 0.75 0.229281
Target:  5'- uCGGCcUUGGCGCCccacuuuuccuuGGCGACCUGCUc -3'
miRNA:   3'- cGCUGuAACUGCGG------------CUGCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 8452 0.74 0.2756
Target:  5'- cGCGAUGUcGGCGUCGAggUGGCCUGCg- -3'
miRNA:   3'- -CGCUGUAaCUGCGGCU--GCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 41970 0.74 0.2756
Target:  5'- uCGACGccgGACGCCGuguccACGGCgCUGCUGg -3'
miRNA:   3'- cGCUGUaa-CUGCGGC-----UGCUG-GACGAC- -5'
26760 3' -54.4 NC_005808.1 + 36688 0.74 0.282797
Target:  5'- aGCGGCGaaaaGAUGCCgGACGAUCUGCg- -3'
miRNA:   3'- -CGCUGUaa--CUGCGG-CUGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 18835 0.73 0.31307
Target:  5'- cGCGGCGcaucggcccggUGGCGCCGGCauGGCgCUGCUGc -3'
miRNA:   3'- -CGCUGUa----------ACUGCGGCUG--CUG-GACGAC- -5'
26760 3' -54.4 NC_005808.1 + 37578 0.73 0.328289
Target:  5'- cGgGGCAUcgcGGCGCUGAaagcggacugcgcCGACCUGCUGu -3'
miRNA:   3'- -CgCUGUAa--CUGCGGCU-------------GCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 38580 0.73 0.329105
Target:  5'- cGCGGCA-UGACGCUGGUGGCCgGCg- -3'
miRNA:   3'- -CGCUGUaACUGCGGCUGCUGGaCGac -5'
26760 3' -54.4 NC_005808.1 + 37029 0.72 0.375373
Target:  5'- gGCGGCcagcGUUGGCGCCGucgauaccguggcggGCGACCUGg-- -3'
miRNA:   3'- -CGCUG----UAACUGCGGC---------------UGCUGGACgac -5'
26760 3' -54.4 NC_005808.1 + 13257 0.71 0.421967
Target:  5'- cGCGugGUUcgagGACuugGCCGGCGACCgccaccgccuugaagUGCUGg -3'
miRNA:   3'- -CGCugUAA----CUG---CGGCUGCUGG---------------ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 34815 0.7 0.437596
Target:  5'- gGCGGCGaagggugGACGCCGGCGcagaucgcGCCggUGCUGc -3'
miRNA:   3'- -CGCUGUaa-----CUGCGGCUGC--------UGG--ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 29259 0.7 0.45759
Target:  5'- cGCGACuu---CGgCGGCGACCUGCc- -3'
miRNA:   3'- -CGCUGuaacuGCgGCUGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 30128 0.7 0.467769
Target:  5'- cGCGcCAgaacACGCCGcCGGCCUGCa- -3'
miRNA:   3'- -CGCuGUaac-UGCGGCuGCUGGACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.