miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26760 3' -54.4 NC_005808.1 + 21826 0.67 0.63084
Target:  5'- aGCGGCggGUUGcucuuguaGUCGAUGGCCUGCg- -3'
miRNA:   3'- -CGCUG--UAACug------CGGCUGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 18423 0.69 0.52029
Target:  5'- gGUGGCGUUGucCGCCGA-GuCCUGCa- -3'
miRNA:   3'- -CGCUGUAACu-GCGGCUgCuGGACGac -5'
26760 3' -54.4 NC_005808.1 + 9439 0.68 0.586078
Target:  5'- aGCGuCGUUGgucgcguccACGCCGAgGGCCUGa-- -3'
miRNA:   3'- -CGCuGUAAC---------UGCGGCUgCUGGACgac -5'
26760 3' -54.4 NC_005808.1 + 42416 0.68 0.586078
Target:  5'- gGCGGgGaUGACGCCGGCauUCUGCg- -3'
miRNA:   3'- -CGCUgUaACUGCGGCUGcuGGACGac -5'
26760 3' -54.4 NC_005808.1 + 18237 0.68 0.597232
Target:  5'- aGCcACGUUcugcugGAUGCCGgucACGACCUGCg- -3'
miRNA:   3'- -CGcUGUAA------CUGCGGC---UGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 30980 0.68 0.597232
Target:  5'- uCGGCG-UGACgGUgGACGAUCUGCUc -3'
miRNA:   3'- cGCUGUaACUG-CGgCUGCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 12611 0.68 0.608416
Target:  5'- uGCG-CA-UGGCGCCGACGcGCUcggcaucgcUGCUGc -3'
miRNA:   3'- -CGCuGUaACUGCGGCUGC-UGG---------ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 36201 0.68 0.608416
Target:  5'- aCGACAUcaccgagGGCGCCGcggcggcCGACCUGgUGu -3'
miRNA:   3'- cGCUGUAa------CUGCGGCu------GCUGGACgAC- -5'
26760 3' -54.4 NC_005808.1 + 14581 0.67 0.63084
Target:  5'- -gGGC--UGAUGCCGGCGGCCgauccGCUu -3'
miRNA:   3'- cgCUGuaACUGCGGCUGCUGGa----CGAc -5'
26760 3' -54.4 NC_005808.1 + 27492 0.69 0.509587
Target:  5'- cGCGAg---GAUGCCGGCGGCCUcgGCc- -3'
miRNA:   3'- -CGCUguaaCUGCGGCUGCUGGA--CGac -5'
26760 3' -54.4 NC_005808.1 + 37777 0.69 0.509587
Target:  5'- uCGACGacGGCGCCGGCcccGACCUcuacaaGCUGg -3'
miRNA:   3'- cGCUGUaaCUGCGGCUG---CUGGA------CGAC- -5'
26760 3' -54.4 NC_005808.1 + 28200 0.7 0.488468
Target:  5'- uGCGGCGccUUGuccaggucggccACGCCGACGACCacGCg- -3'
miRNA:   3'- -CGCUGU--AAC------------UGCGGCUGCUGGa-CGac -5'
26760 3' -54.4 NC_005808.1 + 9176 0.8 0.111167
Target:  5'- aGCGACAacUUGGCGCCGucgacguUGGCCUGCUc -3'
miRNA:   3'- -CGCUGU--AACUGCGGCu------GCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 31497 0.8 0.114405
Target:  5'- cUGACAUaccuUGcCGCCGGCGugCUGCUGg -3'
miRNA:   3'- cGCUGUA----ACuGCGGCUGCugGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 39535 0.79 0.124654
Target:  5'- uGCGGCucgGGCGCuUGACGugCUGCUGa -3'
miRNA:   3'- -CGCUGuaaCUGCG-GCUGCugGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 11010 0.78 0.160701
Target:  5'- aGCG-UAUUGGCGUCGAUGAacaCCUGCUGc -3'
miRNA:   3'- -CGCuGUAACUGCGGCUGCU---GGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 34605 0.76 0.194974
Target:  5'- gGC-ACGUccGACGCCGugGugCUGCUGc -3'
miRNA:   3'- -CGcUGUAa-CUGCGGCugCugGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 36688 0.74 0.282797
Target:  5'- aGCGGCGaaaaGAUGCCgGACGAUCUGCg- -3'
miRNA:   3'- -CGCUGUaa--CUGCGG-CUGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 37578 0.73 0.328289
Target:  5'- cGgGGCAUcgcGGCGCUGAaagcggacugcgcCGACCUGCUGu -3'
miRNA:   3'- -CgCUGUAa--CUGCGGCU-------------GCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 30128 0.7 0.467769
Target:  5'- cGCGcCAgaacACGCCGcCGGCCUGCa- -3'
miRNA:   3'- -CGCuGUaac-UGCGGCuGCUGGACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.