miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26760 3' -54.4 NC_005808.1 + 1371 0.69 0.509587
Target:  5'- gGUGACAUagGGCGCCG-CGGCCacGCg- -3'
miRNA:   3'- -CGCUGUAa-CUGCGGCuGCUGGa-CGac -5'
26760 3' -54.4 NC_005808.1 + 2196 0.66 0.686729
Target:  5'- cCGAUAggGAUGCCGACGcCCUcGUc- -3'
miRNA:   3'- cGCUGUaaCUGCGGCUGCuGGA-CGac -5'
26760 3' -54.4 NC_005808.1 + 2348 0.67 0.642059
Target:  5'- gGCGcGCGU--GCGCCGcaauuCGGCCUGCa- -3'
miRNA:   3'- -CGC-UGUAacUGCGGCu----GCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 4615 0.67 0.630839
Target:  5'- uCGGCGaUGAUGUCGGCGGggaUGCUGg -3'
miRNA:   3'- cGCUGUaACUGCGGCUGCUgg-ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 5119 0.66 0.686728
Target:  5'- uGCGGC--UGGCGCCGuuGAaCUGCa- -3'
miRNA:   3'- -CGCUGuaACUGCGGCugCUgGACGac -5'
26760 3' -54.4 NC_005808.1 + 5255 0.66 0.686729
Target:  5'- uUGGCGUUGGCaCCGGCcACCgUGUUGa -3'
miRNA:   3'- cGCUGUAACUGcGGCUGcUGG-ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 6745 0.75 0.229281
Target:  5'- uCGGCcUUGGCGCCccacuuuuccuuGGCGACCUGCUc -3'
miRNA:   3'- cGCUGuAACUGCGG------------CUGCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 7522 0.67 0.619622
Target:  5'- aUGGCGUUGucuaccguGCGCuCGGCGGCgUGCUc -3'
miRNA:   3'- cGCUGUAAC--------UGCG-GCUGCUGgACGAc -5'
26760 3' -54.4 NC_005808.1 + 8170 0.69 0.498977
Target:  5'- uGCGGCccaggaaGGCGCUGGCGuCCUGCc- -3'
miRNA:   3'- -CGCUGuaa----CUGCGGCUGCuGGACGac -5'
26760 3' -54.4 NC_005808.1 + 8452 0.74 0.2756
Target:  5'- cGCGAUGUcGGCGUCGAggUGGCCUGCg- -3'
miRNA:   3'- -CGCUGUAaCUGCGGCU--GCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 8785 0.66 0.718612
Target:  5'- cGCGGCGcacgaUGggucggccGCGCCGGucaguacCGAUCUGCUGg -3'
miRNA:   3'- -CGCUGUa----AC--------UGCGGCU-------GCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 9176 0.8 0.111167
Target:  5'- aGCGACAacUUGGCGCCGucgacguUGGCCUGCUc -3'
miRNA:   3'- -CGCUGU--AACUGCGGCu------GCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 9296 0.67 0.642059
Target:  5'- uGCG-CAUUGACuuccUCGGCGACCUgGCg- -3'
miRNA:   3'- -CGCuGUAACUGc---GGCUGCUGGA-CGac -5'
26760 3' -54.4 NC_005808.1 + 9439 0.68 0.586078
Target:  5'- aGCGuCGUUGgucgcguccACGCCGAgGGCCUGa-- -3'
miRNA:   3'- -CGCuGUAAC---------UGCGGCUgCUGGACgac -5'
26760 3' -54.4 NC_005808.1 + 9734 0.7 0.488468
Target:  5'- cGCGACAaucucGGCGCCGACcgUCUGCg- -3'
miRNA:   3'- -CGCUGUaa---CUGCGGCUGcuGGACGac -5'
26760 3' -54.4 NC_005808.1 + 9906 0.67 0.619622
Target:  5'- cGCGGCGagcACGUCGGCGAaCUGCUc -3'
miRNA:   3'- -CGCUGUaacUGCGGCUGCUgGACGAc -5'
26760 3' -54.4 NC_005808.1 + 10049 0.66 0.675614
Target:  5'- aGCGGCAU---CGCCGGCGGCa-GCa- -3'
miRNA:   3'- -CGCUGUAacuGCGGCUGCUGgaCGac -5'
26760 3' -54.4 NC_005808.1 + 11010 0.78 0.160701
Target:  5'- aGCG-UAUUGGCGUCGAUGAacaCCUGCUGc -3'
miRNA:   3'- -CGCuGUAACUGCGGCUGCU---GGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 12022 0.67 0.653268
Target:  5'- cGCGGCc--GugGCCGGCGAgguCUUGCc- -3'
miRNA:   3'- -CGCUGuaaCugCGGCUGCU---GGACGac -5'
26760 3' -54.4 NC_005808.1 + 12611 0.68 0.608416
Target:  5'- uGCG-CA-UGGCGCCGACGcGCUcggcaucgcUGCUGc -3'
miRNA:   3'- -CGCuGUaACUGCGGCUGC-UGG---------ACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.