miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26763 3' -50.9 NC_005808.1 + 26906 1.11 0.001357
Target:  5'- uUGGGCAUCGACGUACCCGCUAAAUACg -3'
miRNA:   3'- -ACCCGUAGCUGCAUGGGCGAUUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 3482 0.81 0.170205
Target:  5'- cGGGCGaguUCGACG-GCCCGCUGuaccAGUACg -3'
miRNA:   3'- aCCCGU---AGCUGCaUGGGCGAU----UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 21052 0.8 0.196247
Target:  5'- aGcGGCAugUCGGCcuccuaucagguGUACCCGCUGAAUGCg -3'
miRNA:   3'- aC-CCGU--AGCUG------------CAUGGGCGAUUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 17921 0.79 0.213494
Target:  5'- cUGGGCGUgGACGUgGCCCGCggcggGCg -3'
miRNA:   3'- -ACCCGUAgCUGCA-UGGGCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 6953 0.77 0.288095
Target:  5'- gGGGUAUUGACGcuugACCCGCUcgGUGg -3'
miRNA:   3'- aCCCGUAGCUGCa---UGGGCGAuuUAUg -5'
26763 3' -50.9 NC_005808.1 + 15037 0.74 0.440684
Target:  5'- -uGGUGUUGGCGaUGCCCGCguuGAUGCg -3'
miRNA:   3'- acCCGUAGCUGC-AUGGGCGau-UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 8652 0.72 0.504482
Target:  5'- -aGGCcgCGcCGUACUCGCUGuGUGCa -3'
miRNA:   3'- acCCGuaGCuGCAUGGGCGAUuUAUG- -5'
26763 3' -50.9 NC_005808.1 + 17820 0.72 0.515511
Target:  5'- cGGGCAUCGAgGacgACCCGUg----GCa -3'
miRNA:   3'- aCCCGUAGCUgCa--UGGGCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 6548 0.71 0.606532
Target:  5'- -uGGCGUUGACGUagcaGCCCGCguaggGCu -3'
miRNA:   3'- acCCGUAGCUGCA----UGGGCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 35778 0.69 0.676054
Target:  5'- aGGGCAaCGACGaaACCCGCg------ -3'
miRNA:   3'- aCCCGUaGCUGCa-UGGGCGauuuaug -5'
26763 3' -50.9 NC_005808.1 + 1712 0.69 0.698989
Target:  5'- gUGGGC--CGGCGUGCCgGCgagg-GCg -3'
miRNA:   3'- -ACCCGuaGCUGCAUGGgCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 8573 0.69 0.698989
Target:  5'- cUGGGCGUCGuaggccgcGCGUgcgGCCUgguGCUGGAUAa -3'
miRNA:   3'- -ACCCGUAGC--------UGCA---UGGG---CGAUUUAUg -5'
26763 3' -50.9 NC_005808.1 + 34102 0.69 0.710354
Target:  5'- aGGGCAUCGACGUggacuaugccgACCagaucgccaaucUGCUGGAa-- -3'
miRNA:   3'- aCCCGUAGCUGCA-----------UGG------------GCGAUUUaug -5'
26763 3' -50.9 NC_005808.1 + 9185 0.69 0.710354
Target:  5'- uUGGcGcCGUCGACGUugGCCUGCUcGGcgGCg -3'
miRNA:   3'- -ACC-C-GUAGCUGCA--UGGGCGA-UUuaUG- -5'
26763 3' -50.9 NC_005808.1 + 25187 0.69 0.710354
Target:  5'- aGGGCGaCGugG-GCgCCGCUGAAUcgaaGCg -3'
miRNA:   3'- aCCCGUaGCugCaUG-GGCGAUUUA----UG- -5'
26763 3' -50.9 NC_005808.1 + 14414 0.69 0.721634
Target:  5'- cUGGGCGUCGccagGCGcGCCUGCg----GCa -3'
miRNA:   3'- -ACCCGUAGC----UGCaUGGGCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 21695 0.69 0.721634
Target:  5'- cUGGGCAUCGACacguUGCCgGCa------ -3'
miRNA:   3'- -ACCCGUAGCUGc---AUGGgCGauuuaug -5'
26763 3' -50.9 NC_005808.1 + 24843 0.68 0.729472
Target:  5'- cGGGCAacgauugcagggUGACGagaUACCCGCUAucgacguAGUACg -3'
miRNA:   3'- aCCCGUa-----------GCUGC---AUGGGCGAU-------UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 5824 0.68 0.743884
Target:  5'- cGGGCAU-GGCGUGCCgcaGCaccGUGCg -3'
miRNA:   3'- aCCCGUAgCUGCAUGGg--CGauuUAUG- -5'
26763 3' -50.9 NC_005808.1 + 8460 0.68 0.765631
Target:  5'- -cGGCGUCGAgGUgGCCUGC--GAUGCc -3'
miRNA:   3'- acCCGUAGCUgCA-UGGGCGauUUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.