Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26763 | 3' | -50.9 | NC_005808.1 | + | 1712 | 0.69 | 0.698989 |
Target: 5'- gUGGGC--CGGCGUGCCgGCgagg-GCg -3' miRNA: 3'- -ACCCGuaGCUGCAUGGgCGauuuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 3482 | 0.81 | 0.170205 |
Target: 5'- cGGGCGaguUCGACG-GCCCGCUGuaccAGUACg -3' miRNA: 3'- aCCCGU---AGCUGCaUGGGCGAU----UUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 5824 | 0.68 | 0.743884 |
Target: 5'- cGGGCAU-GGCGUGCCgcaGCaccGUGCg -3' miRNA: 3'- aCCCGUAgCUGCAUGGg--CGauuUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 6548 | 0.71 | 0.606532 |
Target: 5'- -uGGCGUUGACGUagcaGCCCGCguaggGCu -3' miRNA: 3'- acCCGUAGCUGCA----UGGGCGauuuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 6953 | 0.77 | 0.288095 |
Target: 5'- gGGGUAUUGACGcuugACCCGCUcgGUGg -3' miRNA: 3'- aCCCGUAGCUGCa---UGGGCGAuuUAUg -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 8151 | 0.67 | 0.786768 |
Target: 5'- cGGGUGUCGGCGcugcgucCCUGCgc-GUGCg -3' miRNA: 3'- aCCCGUAGCUGCau-----GGGCGauuUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 8460 | 0.68 | 0.765631 |
Target: 5'- -cGGCGUCGAgGUgGCCUGC--GAUGCc -3' miRNA: 3'- acCCGUAGCUgCA-UGGGCGauUUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 8573 | 0.69 | 0.698989 |
Target: 5'- cUGGGCGUCGuaggccgcGCGUgcgGCCUgguGCUGGAUAa -3' miRNA: 3'- -ACCCGUAGC--------UGCA---UGGG---CGAUUUAUg -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 8652 | 0.72 | 0.504482 |
Target: 5'- -aGGCcgCGcCGUACUCGCUGuGUGCa -3' miRNA: 3'- acCCGuaGCuGCAUGGGCGAUuUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 9185 | 0.69 | 0.710354 |
Target: 5'- uUGGcGcCGUCGACGUugGCCUGCUcGGcgGCg -3' miRNA: 3'- -ACC-C-GUAGCUGCA--UGGGCGA-UUuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 10756 | 0.66 | 0.836261 |
Target: 5'- aGGGCGcgcUCGACuucgGCCCGCa------ -3' miRNA: 3'- aCCCGU---AGCUGca--UGGGCGauuuaug -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 13168 | 0.67 | 0.797074 |
Target: 5'- cUGGGCG-CGACGUGCgaGCgcguggGCa -3' miRNA: 3'- -ACCCGUaGCUGCAUGggCGauuua-UG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 13514 | 0.67 | 0.826794 |
Target: 5'- cGGGCcugaccUCGGCGcccgaggaugACCCGCUGAuggccUACg -3' miRNA: 3'- aCCCGu-----AGCUGCa---------UGGGCGAUUu----AUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 14414 | 0.69 | 0.721634 |
Target: 5'- cUGGGCGUCGccagGCGcGCCUGCg----GCa -3' miRNA: 3'- -ACCCGUAGC----UGCaUGGGCGauuuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 15037 | 0.74 | 0.440684 |
Target: 5'- -uGGUGUUGGCGaUGCCCGCguuGAUGCg -3' miRNA: 3'- acCCGUAGCUGC-AUGGGCGau-UUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 15295 | 0.66 | 0.879815 |
Target: 5'- gUGGGCGUCGugGgaaGCCuuCGCcaag-GCg -3' miRNA: 3'- -ACCCGUAGCugCa--UGG--GCGauuuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 15866 | 0.66 | 0.871639 |
Target: 5'- cGGGCGcgcUGGCGgugGCCCgGCUuugcAAUACg -3' miRNA: 3'- aCCCGUa--GCUGCa--UGGG-CGAu---UUAUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 17533 | 0.66 | 0.871639 |
Target: 5'- cUGGGUggCGAUGcUGCCCGauggUAAcgGCg -3' miRNA: 3'- -ACCCGuaGCUGC-AUGGGCg---AUUuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 17820 | 0.72 | 0.515511 |
Target: 5'- cGGGCAUCGAgGacgACCCGUg----GCa -3' miRNA: 3'- aCCCGUAGCUgCa--UGGGCGauuuaUG- -5' |
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26763 | 3' | -50.9 | NC_005808.1 | + | 17921 | 0.79 | 0.213494 |
Target: 5'- cUGGGCGUgGACGUgGCCCGCggcggGCg -3' miRNA: 3'- -ACCCGUAgCUGCA-UGGGCGauuuaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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