miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26763 3' -50.9 NC_005808.1 + 26906 1.11 0.001357
Target:  5'- uUGGGCAUCGACGUACCCGCUAAAUACg -3'
miRNA:   3'- -ACCCGUAGCUGCAUGGGCGAUUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 37579 0.66 0.87164
Target:  5'- gGGGCAUCG-CGg---CGCUGAAaGCg -3'
miRNA:   3'- aCCCGUAGCuGCauggGCGAUUUaUG- -5'
26763 3' -50.9 NC_005808.1 + 30472 0.66 0.862328
Target:  5'- gGGGCGccggucaUCG-CGUcACCUGCUGAAa-- -3'
miRNA:   3'- aCCCGU-------AGCuGCA-UGGGCGAUUUaug -5'
26763 3' -50.9 NC_005808.1 + 18222 0.66 0.845489
Target:  5'- cGGGCuGUCGggauaagccACGU-UCUGCUGGAUGCc -3'
miRNA:   3'- aCCCG-UAGC---------UGCAuGGGCGAUUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 24095 0.66 0.836261
Target:  5'- gGGGCAcgGGCac-CCCGCUAcAUGCg -3'
miRNA:   3'- aCCCGUagCUGcauGGGCGAUuUAUG- -5'
26763 3' -50.9 NC_005808.1 + 10756 0.66 0.836261
Target:  5'- aGGGCGcgcUCGACuucgGCCCGCa------ -3'
miRNA:   3'- aCCCGU---AGCUGca--UGGGCGauuuaug -5'
26763 3' -50.9 NC_005808.1 + 21125 0.67 0.826794
Target:  5'- -uGGUAUCGACGcUGCCCaGCUug--GCc -3'
miRNA:   3'- acCCGUAGCUGC-AUGGG-CGAuuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 39542 0.67 0.786768
Target:  5'- cGGGCGcUUGACGUGCU-GCUGAc--- -3'
miRNA:   3'- aCCCGU-AGCUGCAUGGgCGAUUuaug -5'
26763 3' -50.9 NC_005808.1 + 23374 0.67 0.786768
Target:  5'- -cGGU---GGCGUGCCCGCUGAAa-- -3'
miRNA:   3'- acCCGuagCUGCAUGGGCGAUUUaug -5'
26763 3' -50.9 NC_005808.1 + 8151 0.67 0.786768
Target:  5'- cGGGUGUCGGCGcugcgucCCUGCgc-GUGCg -3'
miRNA:   3'- aCCCGUAGCUGCau-----GGGCGauuUAUG- -5'
26763 3' -50.9 NC_005808.1 + 24843 0.68 0.729472
Target:  5'- cGGGCAacgauugcagggUGACGagaUACCCGCUAucgacguAGUACg -3'
miRNA:   3'- aCCCGUa-----------GCUGC---AUGGGCGAU-------UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 3482 0.81 0.170205
Target:  5'- cGGGCGaguUCGACG-GCCCGCUGuaccAGUACg -3'
miRNA:   3'- aCCCGU---AGCUGCaUGGGCGAU----UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 21052 0.8 0.196247
Target:  5'- aGcGGCAugUCGGCcuccuaucagguGUACCCGCUGAAUGCg -3'
miRNA:   3'- aC-CCGU--AGCUG------------CAUGGGCGAUUUAUG- -5'
26763 3' -50.9 NC_005808.1 + 15037 0.74 0.440684
Target:  5'- -uGGUGUUGGCGaUGCCCGCguuGAUGCg -3'
miRNA:   3'- acCCGUAGCUGC-AUGGGCGau-UUAUG- -5'
26763 3' -50.9 NC_005808.1 + 1712 0.69 0.698989
Target:  5'- gUGGGC--CGGCGUGCCgGCgagg-GCg -3'
miRNA:   3'- -ACCCGuaGCUGCAUGGgCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 8573 0.69 0.698989
Target:  5'- cUGGGCGUCGuaggccgcGCGUgcgGCCUgguGCUGGAUAa -3'
miRNA:   3'- -ACCCGUAGC--------UGCA---UGGG---CGAUUUAUg -5'
26763 3' -50.9 NC_005808.1 + 9185 0.69 0.710354
Target:  5'- uUGGcGcCGUCGACGUugGCCUGCUcGGcgGCg -3'
miRNA:   3'- -ACC-C-GUAGCUGCA--UGGGCGA-UUuaUG- -5'
26763 3' -50.9 NC_005808.1 + 14414 0.69 0.721634
Target:  5'- cUGGGCGUCGccagGCGcGCCUGCg----GCa -3'
miRNA:   3'- -ACCCGUAGC----UGCaUGGGCGauuuaUG- -5'
26763 3' -50.9 NC_005808.1 + 18269 0.66 0.879815
Target:  5'- cGGGCAUCGcucugcCGccugACCCGCggc-UGCu -3'
miRNA:   3'- aCCCGUAGCu-----GCa---UGGGCGauuuAUG- -5'
26763 3' -50.9 NC_005808.1 + 6953 0.77 0.288095
Target:  5'- gGGGUAUUGACGcuugACCCGCUcgGUGg -3'
miRNA:   3'- aCCCGUAGCUGCa---UGGGCGAuuUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.