Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26767 | 3' | -54.9 | NC_005808.1 | + | 21315 | 0.67 | 0.609768 |
Target: 5'- -aCGCCGACCGCUgGgccgacacuuacgCCgACAugcuGGGCa -3' miRNA: 3'- caGCGGCUGGUGAgCa------------GGgUGU----UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 37707 | 0.67 | 0.603067 |
Target: 5'- cGUgGCCGaaaacgagGCCGC-CGUCgCCGCGcuGGGCa -3' miRNA: 3'- -CAgCGGC--------UGGUGaGCAG-GGUGU--UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 17999 | 0.67 | 0.603067 |
Target: 5'- aGUCGCCgccgGACUugUCGUCCgAaccuuGCg -3' miRNA: 3'- -CAGCGG----CUGGugAGCAGGgUguuu-CG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 41002 | 0.67 | 0.603067 |
Target: 5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3' miRNA: 3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 6416 | 0.67 | 0.603067 |
Target: 5'- uGUCGUCGA--ACUCGUCCuCGCuc-GCg -3' miRNA: 3'- -CAGCGGCUggUGAGCAGG-GUGuuuCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 13123 | 0.67 | 0.59192 |
Target: 5'- gGUUGCCGGCCAggcgugggUCGUUCUGCAAcuGCg -3' miRNA: 3'- -CAGCGGCUGGUg-------AGCAGGGUGUUu-CG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 31737 | 0.67 | 0.580807 |
Target: 5'- -gCGCCGACCGaa-G-CCaCGCAGGGCc -3' miRNA: 3'- caGCGGCUGGUgagCaGG-GUGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 18301 | 0.67 | 0.580807 |
Target: 5'- cUCGCCGACCucAC-CGccCCCACGuGGUc -3' miRNA: 3'- cAGCGGCUGG--UGaGCa-GGGUGUuUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 356 | 0.67 | 0.580807 |
Target: 5'- cUCGCCGACCauccggguguGCUUGgCCUGCcgauuGAGCg -3' miRNA: 3'- cAGCGGCUGG----------UGAGCaGGGUGu----UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 38676 | 0.67 | 0.580807 |
Target: 5'- aUCGCgGACgGCagcgCGUCCC-CGAAGa -3' miRNA: 3'- cAGCGgCUGgUGa---GCAGGGuGUUUCg -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 8524 | 0.67 | 0.580807 |
Target: 5'- uGUCGCCGGCgaACUUG-CCCAggUAucGCa -3' miRNA: 3'- -CAGCGGCUGg-UGAGCaGGGU--GUuuCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 38292 | 0.67 | 0.580807 |
Target: 5'- -aCGCCGGCaaGCU-GUCCUACAuGGGCg -3' miRNA: 3'- caGCGGCUGg-UGAgCAGGGUGU-UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 9747 | 0.68 | 0.547769 |
Target: 5'- -gCGCCGACCGuCUgCGgCCagGCGAAGCc -3' miRNA: 3'- caGCGGCUGGU-GA-GCaGGg-UGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 34384 | 0.68 | 0.547769 |
Target: 5'- -cCGCCGACCAg-CGcgaCUACGAGGCc -3' miRNA: 3'- caGCGGCUGGUgaGCag-GGUGUUUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 8647 | 0.68 | 0.547769 |
Target: 5'- gGUCGCCGGCC-UUCaUCgCGCGGucGGCa -3' miRNA: 3'- -CAGCGGCUGGuGAGcAGgGUGUU--UCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 3634 | 0.68 | 0.536883 |
Target: 5'- -aCGCCG-CCgaACUCGUuacCCCACGuccacAAGCa -3' miRNA: 3'- caGCGGCuGG--UGAGCA---GGGUGU-----UUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 940 | 0.68 | 0.526072 |
Target: 5'- --gGCCGAUCugUcCGUCCUGCGcGGUg -3' miRNA: 3'- cagCGGCUGGugA-GCAGGGUGUuUCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 21334 | 0.69 | 0.515345 |
Target: 5'- -aUGCCGGCCACcgCG-CCCAgGuuGCc -3' miRNA: 3'- caGCGGCUGGUGa-GCaGGGUgUuuCG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 2763 | 0.69 | 0.503649 |
Target: 5'- -gUGCCGACCACUgccgacaccucgaCGUUgCGCAGGuGCg -3' miRNA: 3'- caGCGGCUGGUGA-------------GCAGgGUGUUU-CG- -5' |
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26767 | 3' | -54.9 | NC_005808.1 | + | 34017 | 0.69 | 0.498371 |
Target: 5'- gGUCGCCGugaccgucgugucgcGCCugUCGcugCCCGCcaucGGCg -3' miRNA: 3'- -CAGCGGC---------------UGGugAGCa--GGGUGuu--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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