miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26769 3' -59.5 NC_005808.1 + 29472 1.06 0.000419
Target:  5'- cGACGAAGCGCGCGGCCAGUUCCGCGUc -3'
miRNA:   3'- -CUGCUUCGCGCGCCGGUCAAGGCGCA- -5'
26769 3' -59.5 NC_005808.1 + 28620 0.76 0.08678
Target:  5'- aACcGGGCGCGgaugaggcCGGCCAGUUCCGCGc -3'
miRNA:   3'- cUGcUUCGCGC--------GCCGGUCAAGGCGCa -5'
26769 3' -59.5 NC_005808.1 + 16258 0.75 0.097183
Target:  5'- uACG-AGCgGCGCGGCCAGUU-CGCGg -3'
miRNA:   3'- cUGCuUCG-CGCGCCGGUCAAgGCGCa -5'
26769 3' -59.5 NC_005808.1 + 21739 0.71 0.188285
Target:  5'- cACGgcGCGCGCcgucgugcagucGGUCAGUUcCCGCGa -3'
miRNA:   3'- cUGCuuCGCGCG------------CCGGUCAA-GGCGCa -5'
26769 3' -59.5 NC_005808.1 + 14897 0.69 0.257686
Target:  5'- cGGCGAgccgcugccGGCGCGCGGCCuGUauUCCaaGa -3'
miRNA:   3'- -CUGCU---------UCGCGCGCCGGuCA--AGGcgCa -5'
26769 3' -59.5 NC_005808.1 + 41901 0.69 0.263657
Target:  5'- gGGCGGuaucuugGGCGCcCGGCCGGcgCCGcCGUa -3'
miRNA:   3'- -CUGCU-------UCGCGcGCCGGUCaaGGC-GCA- -5'
26769 3' -59.5 NC_005808.1 + 24005 0.69 0.278026
Target:  5'- uGGCGAaggugGGCGCGuCGGCCAaUUCaGCGa -3'
miRNA:   3'- -CUGCU-----UCGCGC-GCCGGUcAAGgCGCa -5'
26769 3' -59.5 NC_005808.1 + 14757 0.69 0.278026
Target:  5'- -uUGAgcAGCgGCGCGGCCGGcgccaCCGCGg -3'
miRNA:   3'- cuGCU--UCG-CGCGCCGGUCaa---GGCGCa -5'
26769 3' -59.5 NC_005808.1 + 3003 0.69 0.285085
Target:  5'- gGACGAAG-GCGCGGCgGGUcauagCUGCu- -3'
miRNA:   3'- -CUGCUUCgCGCGCCGgUCAa----GGCGca -5'
26769 3' -59.5 NC_005808.1 + 25481 0.68 0.29011
Target:  5'- cGAUGAgGGCGCGCucgugcuuggucagGGUCAGgcCCGCGa -3'
miRNA:   3'- -CUGCU-UCGCGCG--------------CCGGUCaaGGCGCa -5'
26769 3' -59.5 NC_005808.1 + 10190 0.68 0.299626
Target:  5'- aGACGuGGCGCGCGGCUuuuuUUCgGUGc -3'
miRNA:   3'- -CUGCuUCGCGCGCCGGuc--AAGgCGCa -5'
26769 3' -59.5 NC_005808.1 + 39147 0.68 0.307109
Target:  5'- -uCGggGCGCGCGGCg---UCUGUGa -3'
miRNA:   3'- cuGCuuCGCGCGCCGgucaAGGCGCa -5'
26769 3' -59.5 NC_005808.1 + 9206 0.68 0.307109
Target:  5'- uGCucGGCgGCGCGGCgCAcGUUCUGCGg -3'
miRNA:   3'- cUGcuUCG-CGCGCCG-GU-CAAGGCGCa -5'
26769 3' -59.5 NC_005808.1 + 27789 0.68 0.314734
Target:  5'- cACGAAGCGCGCG-CCGcgcagCCGCa- -3'
miRNA:   3'- cUGCUUCGCGCGCcGGUcaa--GGCGca -5'
26769 3' -59.5 NC_005808.1 + 26407 0.68 0.322501
Target:  5'- gGGCGAauGGCGCGUGGCguCGGUgaacUCCGaCGc -3'
miRNA:   3'- -CUGCU--UCGCGCGCCG--GUCA----AGGC-GCa -5'
26769 3' -59.5 NC_005808.1 + 14036 0.67 0.346655
Target:  5'- cGACGu-GCGCGCcgcgauGGCCGGcggCCGCa- -3'
miRNA:   3'- -CUGCuuCGCGCG------CCGGUCaa-GGCGca -5'
26769 3' -59.5 NC_005808.1 + 39703 0.67 0.363464
Target:  5'- -uCGggGCGCGCGGCg---UCUGUGc -3'
miRNA:   3'- cuGCuuCGCGCGCCGgucaAGGCGCa -5'
26769 3' -59.5 NC_005808.1 + 8641 0.67 0.378189
Target:  5'- uGGCGAGGUcgccggccuucaucGCGCGGUCGGcauugcgugCCGCGc -3'
miRNA:   3'- -CUGCUUCG--------------CGCGCCGGUCaa-------GGCGCa -5'
26769 3' -59.5 NC_005808.1 + 29590 0.67 0.380829
Target:  5'- cGCGcccAGGCGCGCGguuuGCCAGUugUCCaGCGc -3'
miRNA:   3'- cUGC---UUCGCGCGC----CGGUCA--AGG-CGCa -5'
26769 3' -59.5 NC_005808.1 + 20344 0.66 0.388822
Target:  5'- uGACGGccGGCGaauacgccauCGCGGCCgacaaccAGggCCGCGUc -3'
miRNA:   3'- -CUGCU--UCGC----------GCGCCGG-------UCaaGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.