Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26769 | 3' | -59.5 | NC_005808.1 | + | 2338 | 0.66 | 0.436132 |
Target: 5'- --aGAAGUGCGUGGCgCGcGUgcgCCGCa- -3' miRNA: 3'- cugCUUCGCGCGCCG-GU-CAa--GGCGca -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 3003 | 0.69 | 0.285085 |
Target: 5'- gGACGAAG-GCGCGGCgGGUcauagCUGCu- -3' miRNA: 3'- -CUGCUUCgCGCGCCGgUCAa----GGCGca -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 3923 | 0.66 | 0.407895 |
Target: 5'- -uCGggGaCGCGCuGCCG--UCCGCGa -3' miRNA: 3'- cuGCuuC-GCGCGcCGGUcaAGGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 6640 | 0.66 | 0.398739 |
Target: 5'- -----cGCGCGCuuGGCCGGagugUCCGCGc -3' miRNA: 3'- cugcuuCGCGCG--CCGGUCa---AGGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 8641 | 0.67 | 0.378189 |
Target: 5'- uGGCGAGGUcgccggccuucaucGCGCGGUCGGcauugcgugCCGCGc -3' miRNA: 3'- -CUGCUUCG--------------CGCGCCGGUCaa-------GGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 9206 | 0.68 | 0.307109 |
Target: 5'- uGCucGGCgGCGCGGCgCAcGUUCUGCGg -3' miRNA: 3'- cUGcuUCG-CGCGCCG-GU-CAAGGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 9333 | 0.66 | 0.423756 |
Target: 5'- cGGCGcGGCGgGCGGCggcauccuuuugCAGUUgcuugaugaugcggCCGCGUg -3' miRNA: 3'- -CUGCuUCGCgCGCCG------------GUCAA--------------GGCGCA- -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 9861 | 0.66 | 0.41718 |
Target: 5'- cGAUGAgcguggcaccGGCGCGCugcuucucGGCCAGg--CGCGUg -3' miRNA: 3'- -CUGCU----------UCGCGCG--------CCGGUCaagGCGCA- -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 10190 | 0.68 | 0.299626 |
Target: 5'- aGACGuGGCGCGCGGCUuuuuUUCgGUGc -3' miRNA: 3'- -CUGCuUCGCGCGCCGGuc--AAGgCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 14036 | 0.67 | 0.346655 |
Target: 5'- cGACGu-GCGCGCcgcgauGGCCGGcggCCGCa- -3' miRNA: 3'- -CUGCuuCGCGCG------CCGGUCaa-GGCGca -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 14757 | 0.69 | 0.278026 |
Target: 5'- -uUGAgcAGCgGCGCGGCCGGcgccaCCGCGg -3' miRNA: 3'- cuGCU--UCG-CGCGCCGGUCaa---GGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 14897 | 0.69 | 0.257686 |
Target: 5'- cGGCGAgccgcugccGGCGCGCGGCCuGUauUCCaaGa -3' miRNA: 3'- -CUGCU---------UCGCGCGCCGGuCA--AGGcgCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 16258 | 0.75 | 0.097183 |
Target: 5'- uACG-AGCgGCGCGGCCAGUU-CGCGg -3' miRNA: 3'- cUGCuUCG-CGCGCCGGUCAAgGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 20344 | 0.66 | 0.388822 |
Target: 5'- uGACGGccGGCGaauacgccauCGCGGCCgacaaccAGggCCGCGUc -3' miRNA: 3'- -CUGCU--UCGC----------GCGCCGG-------UCaaGGCGCA- -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 20609 | 0.66 | 0.436132 |
Target: 5'- cGACGAAacccgcacgcuGCGCGaaucCGGCUAucggucGUUCCGCGc -3' miRNA: 3'- -CUGCUU-----------CGCGC----GCCGGU------CAAGGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 21739 | 0.71 | 0.188285 |
Target: 5'- cACGgcGCGCGCcgucgugcagucGGUCAGUUcCCGCGa -3' miRNA: 3'- cUGCuuCGCGCG------------CCGGUCAA-GGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 24005 | 0.69 | 0.278026 |
Target: 5'- uGGCGAaggugGGCGCGuCGGCCAaUUCaGCGa -3' miRNA: 3'- -CUGCU-----UCGCGC-GCCGGUcAAGgCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 25481 | 0.68 | 0.29011 |
Target: 5'- cGAUGAgGGCGCGCucgugcuuggucagGGUCAGgcCCGCGa -3' miRNA: 3'- -CUGCU-UCGCGCG--------------CCGGUCaaGGCGCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 26407 | 0.68 | 0.322501 |
Target: 5'- gGGCGAauGGCGCGUGGCguCGGUgaacUCCGaCGc -3' miRNA: 3'- -CUGCU--UCGCGCGCCG--GUCA----AGGC-GCa -5' |
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26769 | 3' | -59.5 | NC_005808.1 | + | 26533 | 0.66 | 0.426594 |
Target: 5'- cGGCGccGCGCgcgGCGGCCAcgUgCGCGa -3' miRNA: 3'- -CUGCuuCGCG---CGCCGGUcaAgGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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