Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 27789 | 0.68 | 0.314734 |
|
Target: 5'- cACGAAGCGCGCG-CCGcgcagCCGCa- -3' miRNA: 3'- cUGCUUCGCGCGCcGGUcaa--GGCGca -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 28620 | 0.76 | 0.08678 |
|
Target: 5'- aACcGGGCGCGgaugaggcCGGCCAGUUCCGCGc -3' miRNA: 3'- cUGcUUCGCGC--------GCCGGUCAAGGCGCa -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 29472 | 1.06 | 0.000419 |
|
Target: 5'- cGACGAAGCGCGCGGCCAGUUCCGCGUc -3' miRNA: 3'- -CUGCUUCGCGCGCCGGUCAAGGCGCA- -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 29590 | 0.67 | 0.380829 |
|
Target: 5'- cGCGcccAGGCGCGCGguuuGCCAGUugUCCaGCGc -3' miRNA: 3'- cUGC---UUCGCGCGC----CGGUCA--AGG-CGCa -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 30119 | 0.66 | 0.414381 |
|
Target: 5'- cGAUGAGGcCGCGCcagaacacgccgccGGCCuGcaCCGCGUc -3' miRNA: 3'- -CUGCUUC-GCGCG--------------CCGGuCaaGGCGCA- -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 30403 | 0.66 | 0.41718 |
|
Target: 5'- gGGC-AGGCaGCGCgGGCCGGUUUCGUu- -3' miRNA: 3'- -CUGcUUCG-CGCG-CCGGUCAAGGCGca -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 32853 | 0.66 | 0.415313 |
|
Target: 5'- aGGCGAAGCGCGCccaccacgagCAGUUcgcCCGCGg -3' miRNA: 3'- -CUGCUUCGCGCGccg-------GUCAA---GGCGCa -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 39147 | 0.68 | 0.307109 |
|
Target: 5'- -uCGggGCGCGCGGCg---UCUGUGa -3' miRNA: 3'- cuGCuuCGCGCGCCGgucaAGGCGCa -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 39703 | 0.67 | 0.363464 |
|
Target: 5'- -uCGggGCGCGCGGCg---UCUGUGc -3' miRNA: 3'- cuGCuuCGCGCGCCGgucaAGGCGCa -5' |
|||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 41901 | 0.69 | 0.263657 |
|
Target: 5'- gGGCGGuaucuugGGCGCcCGGCCGGcgCCGcCGUa -3' miRNA: 3'- -CUGCU-------UCGCGcGCCGGUCaaGGC-GCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home