Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26769 | 3' | -59.5 | NC_005808.1 | + | 25481 | 0.68 | 0.29011 |
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Target: 5'- cGAUGAgGGCGCGCucgugcuuggucagGGUCAGgcCCGCGa -3' miRNA: 3'- -CUGCU-UCGCGCG--------------CCGGUCaaGGCGCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 3003 | 0.69 | 0.285085 |
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Target: 5'- gGACGAAG-GCGCGGCgGGUcauagCUGCu- -3' miRNA: 3'- -CUGCUUCgCGCGCCGgUCAa----GGCGca -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 14757 | 0.69 | 0.278026 |
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Target: 5'- -uUGAgcAGCgGCGCGGCCGGcgccaCCGCGg -3' miRNA: 3'- cuGCU--UCG-CGCGCCGGUCaa---GGCGCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 24005 | 0.69 | 0.278026 |
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Target: 5'- uGGCGAaggugGGCGCGuCGGCCAaUUCaGCGa -3' miRNA: 3'- -CUGCU-----UCGCGC-GCCGGUcAAGgCGCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 41901 | 0.69 | 0.263657 |
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Target: 5'- gGGCGGuaucuugGGCGCcCGGCCGGcgCCGcCGUa -3' miRNA: 3'- -CUGCU-------UCGCGcGCCGGUCaaGGC-GCA- -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 14897 | 0.69 | 0.257686 |
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Target: 5'- cGGCGAgccgcugccGGCGCGCGGCCuGUauUCCaaGa -3' miRNA: 3'- -CUGCU---------UCGCGCGCCGGuCA--AGGcgCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 21739 | 0.71 | 0.188285 |
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Target: 5'- cACGgcGCGCGCcgucgugcagucGGUCAGUUcCCGCGa -3' miRNA: 3'- cUGCuuCGCGCG------------CCGGUCAA-GGCGCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 16258 | 0.75 | 0.097183 |
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Target: 5'- uACG-AGCgGCGCGGCCAGUU-CGCGg -3' miRNA: 3'- cUGCuUCG-CGCGCCGGUCAAgGCGCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 28620 | 0.76 | 0.08678 |
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Target: 5'- aACcGGGCGCGgaugaggcCGGCCAGUUCCGCGc -3' miRNA: 3'- cUGcUUCGCGC--------GCCGGUCAAGGCGCa -5' |
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| 26769 | 3' | -59.5 | NC_005808.1 | + | 29472 | 1.06 | 0.000419 |
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Target: 5'- cGACGAAGCGCGCGGCCAGUUCCGCGUc -3' miRNA: 3'- -CUGCUUCGCGCGCCGGUCAAGGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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