miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26776 5' -50.4 NC_005808.1 + 40371 0.68 0.816297
Target:  5'- aCGcGC-CGCCugCugCGCGuggugcuacccGACGAGGg -3'
miRNA:   3'- -GCuUGaGUGGugGugGCGU-----------UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 38429 0.68 0.816297
Target:  5'- -uGGCUaCACCucgACCACgGCGcGCAAGGu -3'
miRNA:   3'- gcUUGA-GUGG---UGGUGgCGUuUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 25860 0.69 0.786191
Target:  5'- aCGAGCgUgACCGCCACguCGaacAACAAGGg -3'
miRNA:   3'- -GCUUG-AgUGGUGGUG--GCgu-UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 24017 0.69 0.765224
Target:  5'- uCGGACggccagGCCGUCACCGCGAGCGcGGc -3'
miRNA:   3'- -GCUUGag----UGGUGGUGGCGUUUGUuCC- -5'
26776 5' -50.4 NC_005808.1 + 38767 0.66 0.886527
Target:  5'- cCGAGgUCAugacUCACCACgGCAAGCGc-- -3'
miRNA:   3'- -GCUUgAGU----GGUGGUGgCGUUUGUucc -5'
26776 5' -50.4 NC_005808.1 + 19093 0.67 0.844503
Target:  5'- gCGcGCUCGCggaACUGCCGCAGGuCGAGa -3'
miRNA:   3'- -GCuUGAGUGg--UGGUGGCGUUU-GUUCc -5'
26776 5' -50.4 NC_005808.1 + 20527 0.68 0.796418
Target:  5'- uCGAGC-CGCgCGCCgACCGCGAcccgaGCAAGc -3'
miRNA:   3'- -GCUUGaGUG-GUGG-UGGCGUU-----UGUUCc -5'
26776 5' -50.4 NC_005808.1 + 33392 0.69 0.75451
Target:  5'- aGAACgugCGCCG-CGCCGcCGAGCAGGc -3'
miRNA:   3'- gCUUGa--GUGGUgGUGGC-GUUUGUUCc -5'
26776 5' -50.4 NC_005808.1 + 38863 0.67 0.844503
Target:  5'- cCGAcguGCcCACCACCGgCGUGAACGgcacGGGc -3'
miRNA:   3'- -GCU---UGaGUGGUGGUgGCGUUUGU----UCC- -5'
26776 5' -50.4 NC_005808.1 + 21153 0.69 0.75451
Target:  5'- --uGC-CGCCcCCGCCGCAGgaaauGCAGGGc -3'
miRNA:   3'- gcuUGaGUGGuGGUGGCGUU-----UGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 14770 0.68 0.796418
Target:  5'- -cGGC-CGgCGCCACCGCGGgcagcgcgcGCGAGGa -3'
miRNA:   3'- gcUUGaGUgGUGGUGGCGUU---------UGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 20158 0.68 0.816297
Target:  5'- cCGAACUgGacgaguCCGCCGCCGU---CAAGGc -3'
miRNA:   3'- -GCUUGAgU------GGUGGUGGCGuuuGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 17415 0.68 0.796418
Target:  5'- gCGuGCUCAugacauucaacCCGCCgACCaCGAGCGAGGg -3'
miRNA:   3'- -GCuUGAGU-----------GGUGG-UGGcGUUUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 459 0.68 0.796418
Target:  5'- --uGCUCGCCgcgcACCACCGCuucGACAAu- -3'
miRNA:   3'- gcuUGAGUGG----UGGUGGCGu--UUGUUcc -5'
26776 5' -50.4 NC_005808.1 + 19396 0.69 0.775789
Target:  5'- cCGAAUUCACCgacgagGCCGaccugcugcugUCGCAccAGCAGGGg -3'
miRNA:   3'- -GCUUGAGUGG------UGGU-----------GGCGU--UUGUUCC- -5'
26776 5' -50.4 NC_005808.1 + 31243 0.69 0.765224
Target:  5'- gCGAGCagGUCGCCACCGUAcuGCAAGa -3'
miRNA:   3'- -GCUUGagUGGUGGUGGCGUu-UGUUCc -5'
26776 5' -50.4 NC_005808.1 + 39128 0.66 0.915095
Target:  5'- uCGAACUCGC-----CCGCGAACAucGGGg -3'
miRNA:   3'- -GCUUGAGUGgugguGGCGUUUGU--UCC- -5'
26776 5' -50.4 NC_005808.1 + 13973 0.66 0.886527
Target:  5'- gGAACUgGCCgGCCucauCCGCGcccgguuCAAGGa -3'
miRNA:   3'- gCUUGAgUGG-UGGu---GGCGUuu-----GUUCC- -5'
26776 5' -50.4 NC_005808.1 + 25468 0.67 0.878662
Target:  5'- gCGGcCUCGCCAUCuGCCGCAAcuuCGuGGu -3'
miRNA:   3'- -GCUuGAGUGGUGG-UGGCGUUu--GUuCC- -5'
26776 5' -50.4 NC_005808.1 + 4564 0.67 0.844503
Target:  5'- cCGAAgUCGCCGaggCGCUGCucggugcgccAGGCGAGGa -3'
miRNA:   3'- -GCUUgAGUGGUg--GUGGCG----------UUUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.