miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 29414 0.67 0.516695
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 12238 0.67 0.505924
Target:  5'- cAGCAgCGGCGgGUUcucGCGCGACgaCAa -3'
miRNA:   3'- uUUGUgGUCGCgCAA---CGCGCUGgaGU- -5'
26777 3' -56 NC_005808.1 + 9521 0.67 0.505924
Target:  5'- ---gGCCGcCGCGUcgcUGCGCGACC-CGa -3'
miRNA:   3'- uuugUGGUcGCGCA---ACGCGCUGGaGU- -5'
26777 3' -56 NC_005808.1 + 20292 0.67 0.505924
Target:  5'- -cGCACCaguAGCGgGUUGCucgGCGGCCg-- -3'
miRNA:   3'- uuUGUGG---UCGCgCAACG---CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 23468 0.67 0.505924
Target:  5'- -cACGCCGGCGUGgaacaggUGCGCcgugggaaucucGACCUg- -3'
miRNA:   3'- uuUGUGGUCGCGCa------ACGCG------------CUGGAgu -5'
26777 3' -56 NC_005808.1 + 9576 0.67 0.505924
Target:  5'- cGAGCAuCCGGuCGaacaCGUUGCGC-ACCUCGg -3'
miRNA:   3'- -UUUGU-GGUC-GC----GCAACGCGcUGGAGU- -5'
26777 3' -56 NC_005808.1 + 26005 0.67 0.495249
Target:  5'- cAACACCAuCGCGUgGU-CGGCCUCGu -3'
miRNA:   3'- uUUGUGGUcGCGCAaCGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 14758 0.67 0.484679
Target:  5'- uGAGCAgCGGCGCGgccgGCGCcACCgcgggCAg -3'
miRNA:   3'- -UUUGUgGUCGCGCaa--CGCGcUGGa----GU- -5'
26777 3' -56 NC_005808.1 + 3838 0.67 0.474217
Target:  5'- cGACcaauCCAGCGCacuUUGCGC-ACCUCGc -3'
miRNA:   3'- uUUGu---GGUCGCGc--AACGCGcUGGAGU- -5'
26777 3' -56 NC_005808.1 + 2574 0.68 0.46387
Target:  5'- cGGC-CCAGCGCG-UGCGCGcGCUUg- -3'
miRNA:   3'- uUUGuGGUCGCGCaACGCGC-UGGAgu -5'
26777 3' -56 NC_005808.1 + 8442 0.68 0.46387
Target:  5'- gGAACAUCGGCGCGaUGU-CGGCgUCGa -3'
miRNA:   3'- -UUUGUGGUCGCGCaACGcGCUGgAGU- -5'
26777 3' -56 NC_005808.1 + 21218 0.68 0.46387
Target:  5'- cAGGC-CCAGCGCGccaUUGCGaCGAaCUCGg -3'
miRNA:   3'- -UUUGuGGUCGCGC---AACGC-GCUgGAGU- -5'
26777 3' -56 NC_005808.1 + 36860 0.68 0.46387
Target:  5'- -uGC-CCGGCGCGcUGgGCGAUCUg- -3'
miRNA:   3'- uuUGuGGUCGCGCaACgCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 8740 0.68 0.46387
Target:  5'- gGGACACCAGgGCGc-GCGCGuauucacgugccGCUUCGg -3'
miRNA:   3'- -UUUGUGGUCgCGCaaCGCGC------------UGGAGU- -5'
26777 3' -56 NC_005808.1 + 1447 0.68 0.46387
Target:  5'- cAAACACCuucuugacGGCGCGgucgGCGGCCUCc -3'
miRNA:   3'- -UUUGUGG--------UCGCGCaacgCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 27742 0.68 0.443539
Target:  5'- aAGGCGcCCAGCGUGcgGCGCuGGCCg-- -3'
miRNA:   3'- -UUUGU-GGUCGCGCaaCGCG-CUGGagu -5'
26777 3' -56 NC_005808.1 + 34014 0.68 0.443539
Target:  5'- cAGCACCAGgcCGCac-GCGCGGCCUa- -3'
miRNA:   3'- uUUGUGGUC--GCGcaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 18036 0.68 0.443539
Target:  5'- cGugGCCGGCcucgccaucgccGCGcUGCGCGACCa-- -3'
miRNA:   3'- uUugUGGUCG------------CGCaACGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 27485 0.68 0.443539
Target:  5'- -cGCACCA-CGCGaggaUGCcgGCGGCCUCGg -3'
miRNA:   3'- uuUGUGGUcGCGCa---ACG--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 17598 0.68 0.423718
Target:  5'- uAAACGgCuGCGCGUUGuCGauacCGGCCUCGa -3'
miRNA:   3'- -UUUGUgGuCGCGCAAC-GC----GCUGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.