miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 5' -58.6 NC_005808.1 + 29299 0.66 0.484657
Target:  5'- -aCAAcGCCGGC--CCCGGCGcGCUGCa -3'
miRNA:   3'- uaGUUcCGGCCGcaGGGCUGU-UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 1350 0.66 0.484656
Target:  5'- -cCGuGGUCGGCGgccuugcgcaUCCGGCGACCGa -3'
miRNA:   3'- uaGUuCCGGCCGCa---------GGGCUGUUGGCg -5'
26777 5' -58.6 NC_005808.1 + 24155 0.66 0.474514
Target:  5'- ----uGGCCcaGCGcCUCGACGGCUGCg -3'
miRNA:   3'- uaguuCCGGc-CGCaGGGCUGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 4255 0.66 0.474514
Target:  5'- aGUCGGuGCCGGcCGUCagcgCCGGCAuggugaugGCCGUg -3'
miRNA:   3'- -UAGUUcCGGCC-GCAG----GGCUGU--------UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 38270 0.66 0.461491
Target:  5'- cAUCAAGGCUGGCaccaucguggagGUCaaCGGCAagcuggugcaguucACCGCc -3'
miRNA:   3'- -UAGUUCCGGCCG------------CAGg-GCUGU--------------UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 5575 0.66 0.454557
Target:  5'- uGUCGAGGCCGGCauacUCCaCGAauuuGGCC-Ca -3'
miRNA:   3'- -UAGUUCCGGCCGc---AGG-GCUg---UUGGcG- -5'
26777 5' -58.6 NC_005808.1 + 1464 0.66 0.454556
Target:  5'- -gCGcGGUCGGCGgccUCCUGGCAgGCCGg -3'
miRNA:   3'- uaGUuCCGGCCGC---AGGGCUGU-UGGCg -5'
26777 5' -58.6 NC_005808.1 + 19261 0.66 0.449638
Target:  5'- -gCGAGGCCGucgaauuGCGcggcuaccacgucaUCCCGGCcagugccGGCCGCa -3'
miRNA:   3'- uaGUUCCGGC-------CGC--------------AGGGCUG-------UUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 37283 0.66 0.44475
Target:  5'- uAUCcguGGCCGGCGaccuggaaaauaUCgacgccguggCCGACAacGCCGCg -3'
miRNA:   3'- -UAGuu-CCGGCCGC------------AG----------GGCUGU--UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 36513 0.66 0.444749
Target:  5'- -gCAAGGCC-GCG-CUCGACGACUucgagGCg -3'
miRNA:   3'- uaGUUCCGGcCGCaGGGCUGUUGG-----CG- -5'
26777 5' -58.6 NC_005808.1 + 6385 0.66 0.444749
Target:  5'- aAUCAggcgcAGGCCGGCcggCCCGGugUAGUCGCg -3'
miRNA:   3'- -UAGU-----UCCGGCCGca-GGGCU--GUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 31289 0.66 0.444749
Target:  5'- -aCGuGGCa-GCGaagCCUGGCGACCGCg -3'
miRNA:   3'- uaGUuCCGgcCGCa--GGGCUGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 25677 0.66 0.444749
Target:  5'- cGUCAucaGCCGGCGgaUUUCGGCAacGCUGCu -3'
miRNA:   3'- -UAGUuc-CGGCCGC--AGGGCUGU--UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 34402 0.66 0.443776
Target:  5'- -aCGAGGCCGuGCGcgaugaaaUCgCCGGCAGCauccgggCGCa -3'
miRNA:   3'- uaGUUCCGGC-CGC--------AG-GGCUGUUG-------GCG- -5'
26777 5' -58.6 NC_005808.1 + 17863 0.66 0.4341
Target:  5'- gGUCGAGGCCGcgcaggcGCGguggaagcggCCCGAcCGACUGg -3'
miRNA:   3'- -UAGUUCCGGC-------CGCa---------GGGCU-GUUGGCg -5'
26777 5' -58.6 NC_005808.1 + 35167 0.67 0.425498
Target:  5'- cGUCGAGGaa-GUGUCCgGGCGcCCGCu -3'
miRNA:   3'- -UAGUUCCggcCGCAGGgCUGUuGGCG- -5'
26777 5' -58.6 NC_005808.1 + 31634 0.67 0.41606
Target:  5'- -aCAGguGGCCGcaGUGUcCCCGGCugucGCCGCg -3'
miRNA:   3'- uaGUU--CCGGC--CGCA-GGGCUGu---UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 11586 0.67 0.406752
Target:  5'- ----cGGCCGGCaagCCCGugGACagguCGCg -3'
miRNA:   3'- uaguuCCGGCCGca-GGGCugUUG----GCG- -5'
26777 5' -58.6 NC_005808.1 + 8034 0.67 0.397574
Target:  5'- -aUAGGGCCGcCGUCCUuGCcGCCGUc -3'
miRNA:   3'- uaGUUCCGGCcGCAGGGcUGuUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 30045 0.67 0.388532
Target:  5'- -gCGAGGCCGGCaagaaauUCaCCGAC-GCCGa -3'
miRNA:   3'- uaGUUCCGGCCGc------AG-GGCUGuUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.