Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26779 | 3' | -62.3 | NC_005808.1 | + | 32547 | 1.06 | 0.000206 |
Target: 5'- cAGGAUGCUGCCGCCGGCGAUGCCGCUc -3' miRNA: 3'- -UCCUACGACGGCGGCCGCUACGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 16864 | 0.78 | 0.033588 |
Target: 5'- cAGcGUGCUGCCGCCGGUGAggacgacgaccccGCCGCg -3' miRNA: 3'- -UCcUACGACGGCGGCCGCUa------------CGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 18511 | 0.74 | 0.067658 |
Target: 5'- cGGGGUGCccgUGCC-CCGcGCGGUcGCCGCUa -3' miRNA: 3'- -UCCUACG---ACGGcGGC-CGCUA-CGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 23543 | 0.73 | 0.084598 |
Target: 5'- gAGGAcacGCUgaucgacGCCGCCGGCG--GCCGCUa -3' miRNA: 3'- -UCCUa--CGA-------CGGCGGCCGCuaCGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 5480 | 0.73 | 0.084836 |
Target: 5'- gAGG-UGUUGCCGaugggggguaCGGCGAUGCUGCc -3' miRNA: 3'- -UCCuACGACGGCg---------GCCGCUACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 19166 | 0.73 | 0.08924 |
Target: 5'- uGGAUGCguugucgcugcccgUGCCGCCGGCGucgaugauguucugGCCGUUc -3' miRNA: 3'- uCCUACG--------------ACGGCGGCCGCua------------CGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 37717 | 0.72 | 0.107907 |
Target: 5'- aAGGAcgcaugauUGCgugGCuCGCCGGCGAggauuggaagcugGCCGCUu -3' miRNA: 3'- -UCCU--------ACGa--CG-GCGGCCGCUa------------CGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 970 | 0.71 | 0.128771 |
Target: 5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3' miRNA: 3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 28973 | 0.71 | 0.13235 |
Target: 5'- cGGAcuUGCUGCCGCUacCGAUGCUGUc -3' miRNA: 3'- uCCU--ACGACGGCGGccGCUACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 41559 | 0.71 | 0.13235 |
Target: 5'- cGGcgacAUGCUGCCGCCGGCcguggccuuccaGGUGUucgaCGCUg -3' miRNA: 3'- uCC----UACGACGGCGGCCG------------CUACG----GCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 31506 | 0.7 | 0.136021 |
Target: 5'- -----cUUGCCGCCGGCG-UGCUGCUg -3' miRNA: 3'- uccuacGACGGCGGCCGCuACGGCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 14799 | 0.7 | 0.139786 |
Target: 5'- gAGGAcgUGCUGCgGCUGcGCGgcGCgCGCUu -3' miRNA: 3'- -UCCU--ACGACGgCGGC-CGCuaCG-GCGA- -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 29111 | 0.7 | 0.151659 |
Target: 5'- cGGGAcuUGCUGCCGgucacgCGcGCGAgGCCGCa -3' miRNA: 3'- -UCCU--ACGACGGCg-----GC-CGCUaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 33037 | 0.7 | 0.154141 |
Target: 5'- cGGAUGCUcGCCaCCGGCGAgcagaucgcacugGCCGa- -3' miRNA: 3'- uCCUACGA-CGGcGGCCGCUa------------CGGCga -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 33368 | 0.69 | 0.164441 |
Target: 5'- uGGAa-CUGCCGCCgGGCGc-GCCGCa -3' miRNA: 3'- uCCUacGACGGCGG-CCGCuaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 21733 | 0.69 | 0.164441 |
Target: 5'- cGGAUGCcaCCGuuGgGCGcgGCCGCg -3' miRNA: 3'- uCCUACGacGGCggC-CGCuaCGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 38166 | 0.69 | 0.178182 |
Target: 5'- uGGcGGUGUUGCgGCCGGguacgaccuaCGAcUGCCGCa -3' miRNA: 3'- -UC-CUACGACGgCGGCC----------GCU-ACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 16974 | 0.69 | 0.178182 |
Target: 5'- uGGAcGC-GCUGCUGGCGAccgcGCCGCc -3' miRNA: 3'- uCCUaCGaCGGCGGCCGCUa---CGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 30372 | 0.69 | 0.182984 |
Target: 5'- ----cGCUGuuGCCGGUG-UGCUGCg -3' miRNA: 3'- uccuaCGACggCGGCCGCuACGGCGa -5' |
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26779 | 3' | -62.3 | NC_005808.1 | + | 19480 | 0.69 | 0.182984 |
Target: 5'- cAGGAgccguuaccGCUGUCGCCgugGGCGccGCCGUUg -3' miRNA: 3'- -UCCUa--------CGACGGCGG---CCGCuaCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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