miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26779 3' -62.3 NC_005808.1 + 970 0.71 0.128771
Target:  5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3'
miRNA:   3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 1848 0.66 0.262316
Target:  5'- cAGGAUGUUGCCGCCGucuugcagguucaGCccgugGCCGg- -3'
miRNA:   3'- -UCCUACGACGGCGGC-------------CGcua--CGGCga -5'
26779 3' -62.3 NC_005808.1 + 3330 0.66 0.269664
Target:  5'- uAGG-UGCUGUCGCUGGUGGaaUGCgucaCGCc -3'
miRNA:   3'- -UCCuACGACGGCGGCCGCU--ACG----GCGa -5'
26779 3' -62.3 NC_005808.1 + 3925 0.66 0.283446
Target:  5'- gGGGAcgcGCUGCCGUCcGCGAUGgucaCGUUg -3'
miRNA:   3'- -UCCUa--CGACGGCGGcCGCUACg---GCGA- -5'
26779 3' -62.3 NC_005808.1 + 4378 0.66 0.276487
Target:  5'- cGGAUGC-GCaGCCaGGCGccGUCGCg -3'
miRNA:   3'- uCCUACGaCGgCGG-CCGCuaCGGCGa -5'
26779 3' -62.3 NC_005808.1 + 4632 0.67 0.233346
Target:  5'- gGGGAUGCUggGCCacgcugcGUCGGCcaucgcgucaaggucGAUGCCGUa -3'
miRNA:   3'- -UCCUACGA--CGG-------CGGCCG---------------CUACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 4816 0.67 0.256427
Target:  5'- cGGGAuUGCUG--GCCGGCGAcagGUCGCc -3'
miRNA:   3'- -UCCU-ACGACggCGGCCGCUa--CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 5096 0.66 0.282043
Target:  5'- cAGGcgGCcggcccagcguccggUGCgGCUGGCGccguugaacugcaacGUGCCGCg -3'
miRNA:   3'- -UCCuaCG---------------ACGgCGGCCGC---------------UACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 5183 0.67 0.237575
Target:  5'- gAGGGuuuuguauuUGCUGgUGCUGGUGGUGCUGg- -3'
miRNA:   3'- -UCCU---------ACGACgGCGGCCGCUACGGCga -5'
26779 3' -62.3 NC_005808.1 + 5480 0.73 0.084836
Target:  5'- gAGG-UGUUGCCGaugggggguaCGGCGAUGCUGCc -3'
miRNA:   3'- -UCCuACGACGGCg---------GCCGCUACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 8285 0.68 0.214259
Target:  5'- cAGGGccacGCUGCCggggcagugcaGCCaGCGGUGCgCGCUg -3'
miRNA:   3'- -UCCUa---CGACGG-----------CGGcCGCUACG-GCGA- -5'
26779 3' -62.3 NC_005808.1 + 8512 0.67 0.256427
Target:  5'- -cGAUGCccuugaUGUCGCCGGCGAacuUGCC-Ca -3'
miRNA:   3'- ucCUACG------ACGGCGGCCGCU---ACGGcGa -5'
26779 3' -62.3 NC_005808.1 + 8679 0.66 0.262978
Target:  5'- cGGcUGCUgcGCCGCCcaGGUGugcGCCGCg -3'
miRNA:   3'- uCCuACGA--CGGCGG--CCGCua-CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 8975 0.67 0.256427
Target:  5'- cGGAUucGCagcgguggccgUGCCGCCaGCGGUGgCCGUg -3'
miRNA:   3'- uCCUA--CG-----------ACGGCGGcCGCUAC-GGCGa -5'
26779 3' -62.3 NC_005808.1 + 9512 0.68 0.214259
Target:  5'- gAGGAUGUagGCCGCCG-CGucGCUGCg -3'
miRNA:   3'- -UCCUACGa-CGGCGGCcGCuaCGGCGa -5'
26779 3' -62.3 NC_005808.1 + 14267 0.67 0.231553
Target:  5'- uGGuugGCcugcugcaccaUGCUGUCGGCGAUGCgGCc -3'
miRNA:   3'- uCCua-CG-----------ACGGCGGCCGCUACGgCGa -5'
26779 3' -62.3 NC_005808.1 + 14799 0.7 0.139786
Target:  5'- gAGGAcgUGCUGCgGCUGcGCGgcGCgCGCUu -3'
miRNA:   3'- -UCCU--ACGACGgCGGC-CGCuaCG-GCGA- -5'
26779 3' -62.3 NC_005808.1 + 14819 0.66 0.276487
Target:  5'- cGGcGgcGCUGCCuucGCCcaGGuCGAUGCCGUUg -3'
miRNA:   3'- -UC-CuaCGACGG---CGG--CC-GCUACGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 14898 0.66 0.267644
Target:  5'- cAGGGucugcgcggcgaucUGCUGCUgGCCGGCcucaaGUGCCGaCUg -3'
miRNA:   3'- -UCCU--------------ACGACGG-CGGCCGc----UACGGC-GA- -5'
26779 3' -62.3 NC_005808.1 + 15102 0.66 0.269664
Target:  5'- uGGcgGCcgagGCCGCCGGCauccucgcguGGUGCgUGCg -3'
miRNA:   3'- uCCuaCGa---CGGCGGCCG----------CUACG-GCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.