miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26779 3' -62.3 NC_005808.1 + 32547 1.06 0.000206
Target:  5'- cAGGAUGCUGCCGCCGGCGAUGCCGCUc -3'
miRNA:   3'- -UCCUACGACGGCGGCCGCUACGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 4816 0.67 0.256427
Target:  5'- cGGGAuUGCUG--GCCGGCGAcagGUCGCc -3'
miRNA:   3'- -UCCU-ACGACggCGGCCGCUa--CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 8512 0.67 0.256427
Target:  5'- -cGAUGCccuugaUGUCGCCGGCGAacuUGCC-Ca -3'
miRNA:   3'- ucCUACG------ACGGCGGCCGCU---ACGGcGa -5'
26779 3' -62.3 NC_005808.1 + 19042 0.67 0.256427
Target:  5'- uGGuaGCgGCCGCCGGCGgcGUCGa- -3'
miRNA:   3'- uCCuaCGaCGGCGGCCGCuaCGGCga -5'
26779 3' -62.3 NC_005808.1 + 36676 0.67 0.256427
Target:  5'- uGGGAUGCcGCCaG-CGGCGAaaagaUGCCGg- -3'
miRNA:   3'- -UCCUACGaCGG-CgGCCGCU-----ACGGCga -5'
26779 3' -62.3 NC_005808.1 + 14898 0.66 0.267644
Target:  5'- cAGGGucugcgcggcgaucUGCUGCUgGCCGGCcucaaGUGCCGaCUg -3'
miRNA:   3'- -UCCU--------------ACGACGG-CGGCCGc----UACGGC-GA- -5'
26779 3' -62.3 NC_005808.1 + 18351 0.66 0.269664
Target:  5'- aGGGAUGaccaccuguUUGCCGgCGGCGAgguuggccuUGCCGa- -3'
miRNA:   3'- -UCCUAC---------GACGGCgGCCGCU---------ACGGCga -5'
26779 3' -62.3 NC_005808.1 + 14819 0.66 0.276487
Target:  5'- cGGcGgcGCUGCCuucGCCcaGGuCGAUGCCGUUg -3'
miRNA:   3'- -UC-CuaCGACGG---CGG--CC-GCUACGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 3925 0.66 0.283446
Target:  5'- gGGGAcgcGCUGCCGUCcGCGAUGgucaCGUUg -3'
miRNA:   3'- -UCCUa--CGACGGCGGcCGCUACg---GCGA- -5'
26779 3' -62.3 NC_005808.1 + 30554 0.67 0.25001
Target:  5'- cGGGucuuuGUGCcgGCCGCUGuaGAUGCgGCa -3'
miRNA:   3'- -UCC-----UACGa-CGGCGGCcgCUACGgCGa -5'
26779 3' -62.3 NC_005808.1 + 14267 0.67 0.231553
Target:  5'- uGGuugGCcugcugcaccaUGCUGUCGGCGAUGCgGCc -3'
miRNA:   3'- uCCua-CG-----------ACGGCGGCCGCUACGgCGa -5'
26779 3' -62.3 NC_005808.1 + 39761 0.68 0.214259
Target:  5'- -uGGUGCUGgCGCCGcuGCGcgugGCCGCg -3'
miRNA:   3'- ucCUACGACgGCGGC--CGCua--CGGCGa -5'
26779 3' -62.3 NC_005808.1 + 5480 0.73 0.084836
Target:  5'- gAGG-UGUUGCCGaugggggguaCGGCGAUGCUGCc -3'
miRNA:   3'- -UCCuACGACGGCg---------GCCGCUACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 19166 0.73 0.08924
Target:  5'- uGGAUGCguugucgcugcccgUGCCGCCGGCGucgaugauguucugGCCGUUc -3'
miRNA:   3'- uCCUACG--------------ACGGCGGCCGCua------------CGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 37717 0.72 0.107907
Target:  5'- aAGGAcgcaugauUGCgugGCuCGCCGGCGAggauuggaagcugGCCGCUu -3'
miRNA:   3'- -UCCU--------ACGa--CG-GCGGCCGCUa------------CGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 970 0.71 0.128771
Target:  5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3'
miRNA:   3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5'
26779 3' -62.3 NC_005808.1 + 31506 0.7 0.136021
Target:  5'- -----cUUGCCGCCGGCG-UGCUGCUg -3'
miRNA:   3'- uccuacGACGGCGGCCGCuACGGCGA- -5'
26779 3' -62.3 NC_005808.1 + 29111 0.7 0.151659
Target:  5'- cGGGAcuUGCUGCCGgucacgCGcGCGAgGCCGCa -3'
miRNA:   3'- -UCCU--ACGACGGCg-----GC-CGCUaCGGCGa -5'
26779 3' -62.3 NC_005808.1 + 21733 0.69 0.164441
Target:  5'- cGGAUGCcaCCGuuGgGCGcgGCCGCg -3'
miRNA:   3'- uCCUACGacGGCggC-CGCuaCGGCGa -5'
26779 3' -62.3 NC_005808.1 + 38166 0.69 0.178182
Target:  5'- uGGcGGUGUUGCgGCCGGguacgaccuaCGAcUGCCGCa -3'
miRNA:   3'- -UC-CUACGACGgCGGCC----------GCU-ACGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.