Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26779 | 5' | -58.1 | NC_005808.1 | + | 32581 | 1.09 | 0.000385 |
Target: 5'- aUCAGGACACCGCCGACGCUGUGACCAa -3' miRNA: 3'- -AGUCCUGUGGCGGCUGCGACACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 24133 | 0.78 | 0.07778 |
Target: 5'- aUCGGccGACGCCGCCGGCGCcGcGACCGu -3' miRNA: 3'- -AGUC--CUGUGGCGGCUGCGaCaCUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 41977 | 0.75 | 0.129469 |
Target: 5'- --cGGACGCCGUguccaCGGCGCUGcUGGCCGa -3' miRNA: 3'- aguCCUGUGGCG-----GCUGCGAC-ACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 30342 | 0.74 | 0.161461 |
Target: 5'- cCAGGACacuACCGCCGAuccguucgaugcCGCUGUuGCCGg -3' miRNA: 3'- aGUCCUG---UGGCGGCU------------GCGACAcUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 15163 | 0.74 | 0.165928 |
Target: 5'- cCAGGGCcugcgGCCGCCgGGCGCgGUGcGCCAg -3' miRNA: 3'- aGUCCUG-----UGGCGG-CUGCGaCAC-UGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 39146 | 0.74 | 0.165928 |
Target: 5'- aUCGGGGCG-CG-CGGCGuCUGUGACCAc -3' miRNA: 3'- -AGUCCUGUgGCgGCUGC-GACACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 37681 | 0.73 | 0.189961 |
Target: 5'- gCGGGcauCGCUGCCGACGUUuccaccGUGGCCGa -3' miRNA: 3'- aGUCCu--GUGGCGGCUGCGA------CACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 37600 | 0.71 | 0.234758 |
Target: 5'- --cGGACugCGCCGACcuGCUGUucGCCAa -3' miRNA: 3'- aguCCUGugGCGGCUG--CGACAc-UGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 41138 | 0.71 | 0.239695 |
Target: 5'- cCAGGAgGCCGCCGAcCGCgccgucaagaagGUGuuuGCCAu -3' miRNA: 3'- aGUCCUgUGGCGGCU-GCGa-----------CAC---UGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 30303 | 0.71 | 0.240943 |
Target: 5'- ---cGACGCCGCCGuagccggcACGCUG-GGCCAg -3' miRNA: 3'- agucCUGUGGCGGC--------UGCGACaCUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 8650 | 0.71 | 0.253721 |
Target: 5'- cCAGGccGCGCCGUacuCGCUGUGugCAg -3' miRNA: 3'- aGUCC--UGUGGCGgcuGCGACACugGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 10614 | 0.71 | 0.260317 |
Target: 5'- aCAGGACGCUGgCGucgaguuCGCguuccGUGACCAg -3' miRNA: 3'- aGUCCUGUGGCgGCu------GCGa----CACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 35862 | 0.7 | 0.273926 |
Target: 5'- -uGGGGCGCCaagGCCGACGCcGUGcUCAa -3' miRNA: 3'- agUCCUGUGG---CGGCUGCGaCACuGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 8284 | 0.69 | 0.31816 |
Target: 5'- cCAGGGCcacGCUGCCGGgGCaGUGcaGCCAg -3' miRNA: 3'- aGUCCUG---UGGCGGCUgCGaCAC--UGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 18735 | 0.69 | 0.326034 |
Target: 5'- aCGGGAUGCCGUCGAaCGC---GACCAc -3' miRNA: 3'- aGUCCUGUGGCGGCU-GCGacaCUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 4795 | 0.69 | 0.342214 |
Target: 5'- cCAGcACGCCgGCUGGCGCUGcgggauugcUGGCCGg -3' miRNA: 3'- aGUCcUGUGG-CGGCUGCGAC---------ACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 37720 | 0.67 | 0.403293 |
Target: 5'- -gAGGcCGCCGUCGccGCGCUGggcaacgaccUGACCGg -3' miRNA: 3'- agUCCuGUGGCGGC--UGCGAC----------ACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 30587 | 0.67 | 0.403293 |
Target: 5'- --cGGcCACgGCCG-CGCUGcUGGCCGa -3' miRNA: 3'- aguCCuGUGgCGGCuGCGAC-ACUGGU- -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 11508 | 0.67 | 0.403293 |
Target: 5'- -aAGGGCAgCGCCuGCGCUGgcgugaGGCCc -3' miRNA: 3'- agUCCUGUgGCGGcUGCGACa-----CUGGu -5' |
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26779 | 5' | -58.1 | NC_005808.1 | + | 18424 | 0.67 | 0.406986 |
Target: 5'- cUCAuGGACacgccgaagcgcgcaGCCGUCGagGCGCUG-GGCCAg -3' miRNA: 3'- -AGU-CCUG---------------UGGCGGC--UGCGACaCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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