miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26779 5' -58.1 NC_005808.1 + 4795 0.69 0.342214
Target:  5'- cCAGcACGCCgGCUGGCGCUGcgggauugcUGGCCGg -3'
miRNA:   3'- aGUCcUGUGG-CGGCUGCGAC---------ACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 6719 0.66 0.460826
Target:  5'- aCGGuGAaaaGCCGCUG-CGCUG-GGCCGc -3'
miRNA:   3'- aGUC-CUg--UGGCGGCuGCGACaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 8284 0.69 0.31816
Target:  5'- cCAGGGCcacGCUGCCGGgGCaGUGcaGCCAg -3'
miRNA:   3'- aGUCCUG---UGGCGGCUgCGaCAC--UGGU- -5'
26779 5' -58.1 NC_005808.1 + 8650 0.71 0.253721
Target:  5'- cCAGGccGCGCCGUacuCGCUGUGugCAg -3'
miRNA:   3'- aGUCC--UGUGGCGgcuGCGACACugGU- -5'
26779 5' -58.1 NC_005808.1 + 9183 0.66 0.501496
Target:  5'- aCuuGGCGCCGUCGACGU--UGGCCu -3'
miRNA:   3'- aGucCUGUGGCGGCUGCGacACUGGu -5'
26779 5' -58.1 NC_005808.1 + 9512 0.66 0.470834
Target:  5'- -gAGGAUguagGCCGCCGcguCGCUGcgcGACCc -3'
miRNA:   3'- agUCCUG----UGGCGGCu--GCGACa--CUGGu -5'
26779 5' -58.1 NC_005808.1 + 9971 0.66 0.508777
Target:  5'- aCAGGacaGCACCGCggcgucgcggcccuUGACGCg--GGCCAg -3'
miRNA:   3'- aGUCC---UGUGGCG--------------GCUGCGacaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 10614 0.71 0.260317
Target:  5'- aCAGGACGCUGgCGucgaguuCGCguuccGUGACCAg -3'
miRNA:   3'- aGUCCUGUGGCgGCu------GCGa----CACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 11508 0.67 0.403293
Target:  5'- -aAGGGCAgCGCCuGCGCUGgcgugaGGCCc -3'
miRNA:   3'- agUCCUGUgGCGGcUGCGACa-----CUGGu -5'
26779 5' -58.1 NC_005808.1 + 13185 0.66 0.480952
Target:  5'- gCuGGGCGCCcuugGCCGGCGUUGUacGCCu -3'
miRNA:   3'- aGuCCUGUGG----CGGCUGCGACAc-UGGu -5'
26779 5' -58.1 NC_005808.1 + 14896 0.66 0.501496
Target:  5'- uUCAGGGuCugCGCggCGAucUGCUGcUGGCCGg -3'
miRNA:   3'- -AGUCCU-GugGCG--GCU--GCGAC-ACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 15163 0.74 0.165928
Target:  5'- cCAGGGCcugcgGCCGCCgGGCGCgGUGcGCCAg -3'
miRNA:   3'- aGUCCUG-----UGGCGG-CUGCGaCAC-UGGU- -5'
26779 5' -58.1 NC_005808.1 + 17066 0.66 0.480952
Target:  5'- -gGGGGCGCUGCCGGCgGCggcaaaaccGACCu -3'
miRNA:   3'- agUCCUGUGGCGGCUG-CGaca------CUGGu -5'
26779 5' -58.1 NC_005808.1 + 18424 0.67 0.406986
Target:  5'- cUCAuGGACacgccgaagcgcgcaGCCGUCGagGCGCUG-GGCCAg -3'
miRNA:   3'- -AGU-CCUG---------------UGGCGGC--UGCGACaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 18735 0.69 0.326034
Target:  5'- aCGGGAUGCCGUCGAaCGC---GACCAc -3'
miRNA:   3'- aGUCCUGUGGCGGCU-GCGacaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 19478 0.66 0.460826
Target:  5'- gUCAGGAgccguUACCGCUGuCGCcGUGggcGCCGc -3'
miRNA:   3'- -AGUCCU-----GUGGCGGCuGCGaCAC---UGGU- -5'
26779 5' -58.1 NC_005808.1 + 24133 0.78 0.07778
Target:  5'- aUCGGccGACGCCGCCGGCGCcGcGACCGu -3'
miRNA:   3'- -AGUC--CUGUGGCGGCUGCGaCaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 28082 0.67 0.450931
Target:  5'- gCAGGugGCCGCggcgucguauucCGuCGCgGUGAUCGu -3'
miRNA:   3'- aGUCCugUGGCG------------GCuGCGaCACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 30303 0.71 0.240943
Target:  5'- ---cGACGCCGCCGuagccggcACGCUG-GGCCAg -3'
miRNA:   3'- agucCUGUGGCGGC--------UGCGACaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 30342 0.74 0.161461
Target:  5'- cCAGGACacuACCGCCGAuccguucgaugcCGCUGUuGCCGg -3'
miRNA:   3'- aGUCCUG---UGGCGGCU------------GCGACAcUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.