miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26779 5' -58.1 NC_005808.1 + 32581 1.09 0.000385
Target:  5'- aUCAGGACACCGCCGACGCUGUGACCAa -3'
miRNA:   3'- -AGUCCUGUGGCGGCUGCGACACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 14896 0.66 0.501496
Target:  5'- uUCAGGGuCugCGCggCGAucUGCUGcUGGCCGg -3'
miRNA:   3'- -AGUCCU-GugGCG--GCU--GCGAC-ACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 9183 0.66 0.501496
Target:  5'- aCuuGGCGCCGUCGACGU--UGGCCu -3'
miRNA:   3'- aGucCUGUGGCGGCUGCGacACUGGu -5'
26779 5' -58.1 NC_005808.1 + 13185 0.66 0.480952
Target:  5'- gCuGGGCGCCcuugGCCGGCGUUGUacGCCu -3'
miRNA:   3'- aGuCCUGUGG----CGGCUGCGACAc-UGGu -5'
26779 5' -58.1 NC_005808.1 + 39767 0.66 0.470834
Target:  5'- ---uGGCGCCGCUG-CGC-GUGGCCGc -3'
miRNA:   3'- agucCUGUGGCGGCuGCGaCACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 6719 0.66 0.460826
Target:  5'- aCGGuGAaaaGCCGCUG-CGCUG-GGCCGc -3'
miRNA:   3'- aGUC-CUg--UGGCGGCuGCGACaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 28082 0.67 0.450931
Target:  5'- gCAGGugGCCGCggcgucguauucCGuCGCgGUGAUCGu -3'
miRNA:   3'- aGUCCugUGGCG------------GCuGCGaCACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 11508 0.67 0.403293
Target:  5'- -aAGGGCAgCGCCuGCGCUGgcgugaGGCCc -3'
miRNA:   3'- agUCCUGUgGCGGcUGCGACa-----CUGGu -5'
26779 5' -58.1 NC_005808.1 + 4795 0.69 0.342214
Target:  5'- cCAGcACGCCgGCUGGCGCUGcgggauugcUGGCCGg -3'
miRNA:   3'- aGUCcUGUGG-CGGCUGCGAC---------ACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 18735 0.69 0.326034
Target:  5'- aCGGGAUGCCGUCGAaCGC---GACCAc -3'
miRNA:   3'- aGUCCUGUGGCGGCU-GCGacaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 35862 0.7 0.273926
Target:  5'- -uGGGGCGCCaagGCCGACGCcGUGcUCAa -3'
miRNA:   3'- agUCCUGUGG---CGGCUGCGaCACuGGU- -5'
26779 5' -58.1 NC_005808.1 + 37600 0.71 0.234758
Target:  5'- --cGGACugCGCCGACcuGCUGUucGCCAa -3'
miRNA:   3'- aguCCUGugGCGGCUG--CGACAc-UGGU- -5'
26779 5' -58.1 NC_005808.1 + 30303 0.71 0.240943
Target:  5'- ---cGACGCCGCCGuagccggcACGCUG-GGCCAg -3'
miRNA:   3'- agucCUGUGGCGGC--------UGCGACaCUGGU- -5'
26779 5' -58.1 NC_005808.1 + 41138 0.71 0.239695
Target:  5'- cCAGGAgGCCGCCGAcCGCgccgucaagaagGUGuuuGCCAu -3'
miRNA:   3'- aGUCCUgUGGCGGCU-GCGa-----------CAC---UGGU- -5'
26779 5' -58.1 NC_005808.1 + 37681 0.73 0.189961
Target:  5'- gCGGGcauCGCUGCCGACGUUuccaccGUGGCCGa -3'
miRNA:   3'- aGUCCu--GUGGCGGCUGCGA------CACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 39146 0.74 0.165928
Target:  5'- aUCGGGGCG-CG-CGGCGuCUGUGACCAc -3'
miRNA:   3'- -AGUCCUGUgGCgGCUGC-GACACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 15163 0.74 0.165928
Target:  5'- cCAGGGCcugcgGCCGCCgGGCGCgGUGcGCCAg -3'
miRNA:   3'- aGUCCUG-----UGGCGG-CUGCGaCAC-UGGU- -5'
26779 5' -58.1 NC_005808.1 + 30342 0.74 0.161461
Target:  5'- cCAGGACacuACCGCCGAuccguucgaugcCGCUGUuGCCGg -3'
miRNA:   3'- aGUCCUG---UGGCGGCU------------GCGACAcUGGU- -5'
26779 5' -58.1 NC_005808.1 + 41977 0.75 0.129469
Target:  5'- --cGGACGCCGUguccaCGGCGCUGcUGGCCGa -3'
miRNA:   3'- aguCCUGUGGCG-----GCUGCGAC-ACUGGU- -5'
26779 5' -58.1 NC_005808.1 + 9971 0.66 0.508777
Target:  5'- aCAGGacaGCACCGCggcgucgcggcccuUGACGCg--GGCCAg -3'
miRNA:   3'- aGUCC---UGUGGCG--------------GCUGCGacaCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.