miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 5' -62.1 NC_005808.1 + 33927 0.98 0.000953
Target:  5'- uGGGC-GCGCAGCAGCCGCUGCACACAg -3'
miRNA:   3'- -CCCGcCGCGUCGUCGGCGACGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 40460 0.82 0.017013
Target:  5'- cGGCGGCGCGGUugaccGGCUGCUGCACGa- -3'
miRNA:   3'- cCCGCCGCGUCG-----UCGGCGACGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 18850 0.78 0.03523
Target:  5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3'
miRNA:   3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 5632 0.76 0.057492
Target:  5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3'
miRNA:   3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 16822 0.75 0.062641
Target:  5'- aGGCGGCGCAGUucaCGCgGCGCAUAg -3'
miRNA:   3'- cCCGCCGCGUCGucgGCGaCGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 15776 0.74 0.074304
Target:  5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3'
miRNA:   3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 14785 0.74 0.075794
Target:  5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3'
miRNA:   3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 25770 0.74 0.076441
Target:  5'- uGGGCGGCgGCAaCgauGGCCGCgaUGCGCGCGg -3'
miRNA:   3'- -CCCGCCG-CGUcG---UCGGCG--ACGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 14894 0.74 0.080892
Target:  5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3'
miRNA:   3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 35049 0.73 0.08321
Target:  5'- cGGUGGCGCcgcagaucgAGCAcGCCGCcgaGCGCACGg -3'
miRNA:   3'- cCCGCCGCG---------UCGU-CGGCGa--CGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 9210 0.73 0.090548
Target:  5'- cGGCGGCGCGGCGcacguuCUGCgGCGCGCc -3'
miRNA:   3'- cCCGCCGCGUCGUc-----GGCGaCGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 28141 0.73 0.093127
Target:  5'- cGGGCGGCaGCAGCuuGCCGgUGguCAg- -3'
miRNA:   3'- -CCCGCCG-CGUCGu-CGGCgACguGUgu -5'
26782 5' -62.1 NC_005808.1 + 41457 0.73 0.093127
Target:  5'- cGGCGaGCGCAaaCGGCCGCUGCuCAUg -3'
miRNA:   3'- cCCGC-CGCGUc-GUCGGCGACGuGUGu -5'
26782 5' -62.1 NC_005808.1 + 25620 0.73 0.095777
Target:  5'- cGGCGGCGCGGUcGCCaGCaGCGCGu- -3'
miRNA:   3'- cCCGCCGCGUCGuCGG-CGaCGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 7894 0.72 0.100445
Target:  5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3'
miRNA:   3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5'
26782 5' -62.1 NC_005808.1 + 18818 0.72 0.101291
Target:  5'- uGGCGGCGCAGgaAGCUGCgaauuuUGCGCGgCAu -3'
miRNA:   3'- cCCGCCGCGUCg-UCGGCG------ACGUGU-GU- -5'
26782 5' -62.1 NC_005808.1 + 31456 0.72 0.107103
Target:  5'- aGGCGGCccaGCAGCAgGCCGaaCUGCuCGCAc -3'
miRNA:   3'- cCCGCCG---CGUCGU-CGGC--GACGuGUGU- -5'
26782 5' -62.1 NC_005808.1 + 18461 0.71 0.116411
Target:  5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3'
miRNA:   3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5'
26782 5' -62.1 NC_005808.1 + 37444 0.71 0.12303
Target:  5'- aGGGCGuGaGCAGCgacGGCCGCcUGCGCgGCAc -3'
miRNA:   3'- -CCCGC-CgCGUCG---UCGGCG-ACGUG-UGU- -5'
26782 5' -62.1 NC_005808.1 + 27839 0.71 0.126469
Target:  5'- cGGUGGCGcCGGCcgcGCCGCUGCuCAa- -3'
miRNA:   3'- cCCGCCGC-GUCGu--CGGCGACGuGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.