miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 5' -62.1 NC_005808.1 + 167 0.66 0.279291
Target:  5'- aGGCGGaUGCGccccGguGUCGCUGgGCACc -3'
miRNA:   3'- cCCGCC-GCGU----CguCGGCGACgUGUGu -5'
26782 5' -62.1 NC_005808.1 + 276 0.67 0.252542
Target:  5'- aGGCacGGCGUccAGUAGCUGCgccggaagGCGCGCu -3'
miRNA:   3'- cCCG--CCGCG--UCGUCGGCGa-------CGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 418 0.66 0.289172
Target:  5'- cGGCGGUGaucguCGGCcguaccuugucguugGGCUGCUGCGCGg- -3'
miRNA:   3'- cCCGCCGC-----GUCG---------------UCGGCGACGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 611 0.67 0.259025
Target:  5'- cGGGuCGGCcaGCAGC-GCCG-UGgACACGg -3'
miRNA:   3'- -CCC-GCCG--CGUCGuCGGCgACgUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 2241 0.69 0.179946
Target:  5'- aGGCGGCGC-GUGGCCGC-GCAa--- -3'
miRNA:   3'- cCCGCCGCGuCGUCGGCGaCGUgugu -5'
26782 5' -62.1 NC_005808.1 + 3572 0.67 0.246192
Target:  5'- cGGGCugGGCGUAcaccgauccGCGGCCGCcagUGUugGCc -3'
miRNA:   3'- -CCCG--CCGCGU---------CGUCGGCG---ACGugUGu -5'
26782 5' -62.1 NC_005808.1 + 4512 0.66 0.265644
Target:  5'- cGGGCGGCGCccgugaacGUGGCgUGCUGgGCGg- -3'
miRNA:   3'- -CCCGCCGCGu-------CGUCG-GCGACgUGUgu -5'
26782 5' -62.1 NC_005808.1 + 5632 0.76 0.057492
Target:  5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3'
miRNA:   3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 6622 0.66 0.279291
Target:  5'- -aGCgGGCGC-GUGG-CGCUGCGCGCGg -3'
miRNA:   3'- ccCG-CCGCGuCGUCgGCGACGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 7703 0.67 0.252542
Target:  5'- cGGCGGC-CGGCuuGCCGaugaaCUGCAgCGCAc -3'
miRNA:   3'- cCCGCCGcGUCGu-CGGC-----GACGU-GUGU- -5'
26782 5' -62.1 NC_005808.1 + 7894 0.72 0.100445
Target:  5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3'
miRNA:   3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5'
26782 5' -62.1 NC_005808.1 + 8300 0.7 0.153134
Target:  5'- gGGGCaGUGCAGcCAGCgG-UGCGCGCu -3'
miRNA:   3'- -CCCGcCGCGUC-GUCGgCgACGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 8667 0.71 0.133615
Target:  5'- -cGCuGuGUGCAGCGGCUGCUGCGC-CGc -3'
miRNA:   3'- ccCG-C-CGCGUCGUCGGCGACGUGuGU- -5'
26782 5' -62.1 NC_005808.1 + 8739 0.68 0.194858
Target:  5'- cGGCgGGCGCGGCGcuaCCGUcaacauggaauuUGCGCGCGg -3'
miRNA:   3'- cCCG-CCGCGUCGUc--GGCG------------ACGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 8748 0.68 0.204316
Target:  5'- aGGGCGcGCGC-GUAuucacguGCCGCUucgggcaGCACGCGg -3'
miRNA:   3'- -CCCGC-CGCGuCGU-------CGGCGA-------CGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 9210 0.73 0.090548
Target:  5'- cGGCGGCGCGGCGcacguuCUGCgGCGCGCc -3'
miRNA:   3'- cCCGCCGCGUCGUc-----GGCGaCGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 9341 0.7 0.156912
Target:  5'- cGGGCGGCggcauccuuuuGCAguugcuugaugauGCGGCCGCgUGCAUuguGCAg -3'
miRNA:   3'- -CCCGCCG-----------CGU-------------CGUCGGCG-ACGUG---UGU- -5'
26782 5' -62.1 NC_005808.1 + 10156 0.71 0.137326
Target:  5'- gGGGCGuaGgGGCAGUCGCUGC-CGu- -3'
miRNA:   3'- -CCCGCcgCgUCGUCGGCGACGuGUgu -5'
26782 5' -62.1 NC_005808.1 + 13324 0.66 0.300798
Target:  5'- aGGCGGCGUaggcuuucGGCAggucGCCGCcgaaGuCGCGCAa -3'
miRNA:   3'- cCCGCCGCG--------UCGU----CGGCGa---C-GUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 14785 0.74 0.075794
Target:  5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3'
miRNA:   3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.