Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 14852 | 0.69 | 0.166055 |
Target: 5'- uGGCGGC-CAGCGccGCaCGCUGgGCGCc -3' miRNA: 3'- cCCGCCGcGUCGU--CG-GCGACgUGUGu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 14894 | 0.74 | 0.080892 |
Target: 5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3' miRNA: 3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 14899 | 0.67 | 0.259025 |
Target: 5'- aGGGUcuGCGCGGCGauCUGCUGCugGCc -3' miRNA: 3'- -CCCGc-CGCGUCGUc-GGCGACGugUGu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 15776 | 0.74 | 0.074304 |
Target: 5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3' miRNA: 3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 15888 | 0.68 | 0.205391 |
Target: 5'- cGGGCacguaggugaGGCccaGCAGCuuGCCGCUGCuGCugAu -3' miRNA: 3'- -CCCG----------CCG---CGUCGu-CGGCGACG-UGugU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 16052 | 0.7 | 0.161643 |
Target: 5'- aGGCcaguucGCGCAcGUGGCCGCcGCGCGCGg -3' miRNA: 3'- cCCGc-----CGCGU-CGUCGGCGaCGUGUGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 16262 | 0.69 | 0.170576 |
Target: 5'- -aGCGGCGCGGcCAGuUCGCgGUGCGCGu -3' miRNA: 3'- ccCGCCGCGUC-GUC-GGCGaCGUGUGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 16822 | 0.75 | 0.062641 |
Target: 5'- aGGCGGCGCAGUucaCGCgGCGCAUAg -3' miRNA: 3'- cCCGCCGCGUCGucgGCGaCGUGUGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 17706 | 0.66 | 0.265644 |
Target: 5'- cGGGcCGGgaaaugcccauCGCGGCAa--GCUGCGCGCAu -3' miRNA: 3'- -CCC-GCC-----------GCGUCGUcggCGACGUGUGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 18461 | 0.71 | 0.116411 |
Target: 5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3' miRNA: 3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 18512 | 0.67 | 0.246192 |
Target: 5'- gGGGUGcccgugccccGCGCGGUcGCCGCuacUGUGCGCGg -3' miRNA: 3'- -CCCGC----------CGCGUCGuCGGCG---ACGUGUGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 18818 | 0.72 | 0.101291 |
Target: 5'- uGGCGGCGCAGgaAGCUGCgaauuuUGCGCGgCAu -3' miRNA: 3'- cCCGCCGCGUCg-UCGGCG------ACGUGU-GU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 18850 | 0.78 | 0.03523 |
Target: 5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3' miRNA: 3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 20213 | 0.69 | 0.184801 |
Target: 5'- uGGCaGCGCccGCGGCCGgCUGUugGCc -3' miRNA: 3'- cCCGcCGCGu-CGUCGGC-GACGugUGu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 21426 | 0.69 | 0.191792 |
Target: 5'- aGGCcGCGCAGCAgGCCGCgcuguugaaccaggGCGCGg- -3' miRNA: 3'- cCCGcCGCGUCGU-CGGCGa-------------CGUGUgu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 22416 | 0.67 | 0.239976 |
Target: 5'- aGGGCGaCGacaaGGCgaAGCCGCaagGCGCACc -3' miRNA: 3'- -CCCGCcGCg---UCG--UCGGCGa--CGUGUGu -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 23535 | 0.66 | 0.300798 |
Target: 5'- aGGCGGCGCAcGCGGUCGaugGC-CuCGg -3' miRNA: 3'- cCCGCCGCGU-CGUCGGCga-CGuGuGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 23652 | 0.7 | 0.149034 |
Target: 5'- cGGCGGCG-GGCAGCaaCUGCAC-CAg -3' miRNA: 3'- cCCGCCGCgUCGUCGgcGACGUGuGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 23739 | 0.66 | 0.300798 |
Target: 5'- cGGUGGCGCgcAGCAGCgccaUGCcgGCGC-CAc -3' miRNA: 3'- cCCGCCGCG--UCGUCG----GCGa-CGUGuGU- -5' |
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26782 | 5' | -62.1 | NC_005808.1 | + | 24117 | 0.66 | 0.265644 |
Target: 5'- -uGCGcGCGUAGgggucguagucCAGCCgGCUGCGCGCc -3' miRNA: 3'- ccCGC-CGCGUC-----------GUCGG-CGACGUGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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