Results 21 - 40 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 8667 | 0.71 | 0.133615 |
Target: 5'- -cGCuGuGUGCAGCGGCUGCUGCGC-CGc -3' miRNA: 3'- ccCG-C-CGCGUCGUCGGCGACGUGuGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 10156 | 0.71 | 0.137326 |
Target: 5'- gGGGCGuaGgGGCAGUCGCUGC-CGu- -3' miRNA: 3'- -CCCGCcgCgUCGUCGGCGACGuGUgu -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 24302 | 0.7 | 0.144639 |
Target: 5'- gGGGCGGUgaggucgGCgAGCAGCCGCggGuCAgGCGg -3' miRNA: 3'- -CCCGCCG-------CG-UCGUCGGCGa-C-GUgUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 38717 | 0.7 | 0.145034 |
Target: 5'- cGGCGGCGaCGGCAGC-GCgGCcUACAg -3' miRNA: 3'- cCCGCCGC-GUCGUCGgCGaCGuGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 23652 | 0.7 | 0.149034 |
Target: 5'- cGGCGGCG-GGCAGCaaCUGCAC-CAg -3' miRNA: 3'- cCCGCCGCgUCGUCGgcGACGUGuGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 37252 | 0.7 | 0.153134 |
Target: 5'- aGGCGGCcacGCAGCGcgauGCCauGCUGCGcCACGu -3' miRNA: 3'- cCCGCCG---CGUCGU----CGG--CGACGU-GUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 8300 | 0.7 | 0.153134 |
Target: 5'- gGGGCaGUGCAGcCAGCgG-UGCGCGCu -3' miRNA: 3'- -CCCGcCGCGUC-GUCGgCgACGUGUGu -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 9341 | 0.7 | 0.156912 |
Target: 5'- cGGGCGGCggcauccuuuuGCAguugcuugaugauGCGGCCGCgUGCAUuguGCAg -3' miRNA: 3'- -CCCGCCG-----------CGU-------------CGUCGGCG-ACGUG---UGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 16052 | 0.7 | 0.161643 |
Target: 5'- aGGCcaguucGCGCAcGUGGCCGCcGCGCGCGg -3' miRNA: 3'- cCCGc-----CGCGU-CGUCGGCGaCGUGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 25723 | 0.7 | 0.163395 |
Target: 5'- cGGCGGggucgucguccucacCgGCGGCAGCaCGCUGgGCGCGc -3' miRNA: 3'- cCCGCC---------------G-CGUCGUCG-GCGACgUGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 14852 | 0.69 | 0.166055 |
Target: 5'- uGGCGGC-CAGCGccGCaCGCUGgGCGCc -3' miRNA: 3'- cCCGCCGcGUCGU--CG-GCGACgUGUGu -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 16262 | 0.69 | 0.170576 |
Target: 5'- -aGCGGCGCGGcCAGuUCGCgGUGCGCGu -3' miRNA: 3'- ccCGCCGCGUC-GUC-GGCGaCGUGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 30522 | 0.69 | 0.170576 |
Target: 5'- aGGUGGCGCAGCuucucGaccaCGCUGUAuCGCGg -3' miRNA: 3'- cCCGCCGCGUCGu----Cg---GCGACGU-GUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 38166 | 0.69 | 0.178512 |
Target: 5'- uGGCGGUGUuGCGGCCGgguacgaccuacgaCUGcCGCACGc -3' miRNA: 3'- cCCGCCGCGuCGUCGGC--------------GAC-GUGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 2241 | 0.69 | 0.179946 |
Target: 5'- aGGCGGCGC-GUGGCCGC-GCAa--- -3' miRNA: 3'- cCCGCCGCGuCGUCGGCGaCGUgugu -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 33202 | 0.69 | 0.179946 |
Target: 5'- -cGCGGCcugcgcgacauGCAGUGGCUGCacaaUGCACGCGg -3' miRNA: 3'- ccCGCCG-----------CGUCGUCGGCG----ACGUGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 20213 | 0.69 | 0.184801 |
Target: 5'- uGGCaGCGCccGCGGCCGgCUGUugGCc -3' miRNA: 3'- cCCGcCGCGu-CGUCGGC-GACGugUGu -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 36259 | 0.69 | 0.189771 |
Target: 5'- cGGGCcgGGCGCuuuggcuggGGCGgaacgcGCCGCgucuUGCACGCAc -3' miRNA: 3'- -CCCG--CCGCG---------UCGU------CGGCG----ACGUGUGU- -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 21426 | 0.69 | 0.191792 |
Target: 5'- aGGCcGCGCAGCAgGCCGCgcuguugaaccaggGCGCGg- -3' miRNA: 3'- cCCGcCGCGUCGU-CGGCGa-------------CGUGUgu -5' |
|||||||
26782 | 5' | -62.1 | NC_005808.1 | + | 27794 | 0.68 | 0.194858 |
Target: 5'- -aGCGcGCGCcgcGCAGCCGCaGCACGu- -3' miRNA: 3'- ccCGC-CGCGu--CGUCGGCGaCGUGUgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home