miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 5' -62.1 NC_005808.1 + 7703 0.67 0.252542
Target:  5'- cGGCGGC-CGGCuuGCCGaugaaCUGCAgCGCAc -3'
miRNA:   3'- cCCGCCGcGUCGu-CGGC-----GACGU-GUGU- -5'
26782 5' -62.1 NC_005808.1 + 276 0.67 0.252542
Target:  5'- aGGCacGGCGUccAGUAGCUGCgccggaagGCGCGCu -3'
miRNA:   3'- cCCG--CCGCG--UCGUCGGCGa-------CGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 26141 0.67 0.252542
Target:  5'- cGGCagauuuGGCGCAGCGGCuCGCcgucugcgaUGCGguCGCAg -3'
miRNA:   3'- cCCG------CCGCGUCGUCG-GCG---------ACGU--GUGU- -5'
26782 5' -62.1 NC_005808.1 + 18512 0.67 0.246192
Target:  5'- gGGGUGcccgugccccGCGCGGUcGCCGCuacUGUGCGCGg -3'
miRNA:   3'- -CCCGC----------CGCGUCGuCGGCG---ACGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 3572 0.67 0.246192
Target:  5'- cGGGCugGGCGUAcaccgauccGCGGCCGCcagUGUugGCc -3'
miRNA:   3'- -CCCG--CCGCGU---------CGUCGGCG---ACGugUGu -5'
26782 5' -62.1 NC_005808.1 + 22416 0.67 0.239976
Target:  5'- aGGGCGaCGacaaGGCgaAGCCGCaagGCGCACc -3'
miRNA:   3'- -CCCGCcGCg---UCG--UCGGCGa--CGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 42107 0.67 0.233891
Target:  5'- -cGCGGCGCAGUAuGCUGCcgagGCAUcCGa -3'
miRNA:   3'- ccCGCCGCGUCGU-CGGCGa---CGUGuGU- -5'
26782 5' -62.1 NC_005808.1 + 40018 0.67 0.233891
Target:  5'- aGGGCGGCaagcgcgcGCAcGCgcugGGCCGUgucGCACAUg -3'
miRNA:   3'- -CCCGCCG--------CGU-CG----UCGGCGa--CGUGUGu -5'
26782 5' -62.1 NC_005808.1 + 42247 0.67 0.233891
Target:  5'- cGGGCcuGGCGgA-CGGCCuGCUGCGCGa- -3'
miRNA:   3'- -CCCG--CCGCgUcGUCGG-CGACGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 34244 0.68 0.21084
Target:  5'- cGGCGGCGCAGgaGGUacugGCaugaGCACGCAc -3'
miRNA:   3'- cCCGCCGCGUCg-UCGg---CGa---CGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 15888 0.68 0.205391
Target:  5'- cGGGCacguaggugaGGCccaGCAGCuuGCCGCUGCuGCugAu -3'
miRNA:   3'- -CCCG----------CCG---CGUCGu-CGGCGACG-UGugU- -5'
26782 5' -62.1 NC_005808.1 + 26533 0.68 0.205391
Target:  5'- cGGCGccgcGCGCGGCGGCCaCgUGCGCGa- -3'
miRNA:   3'- cCCGC----CGCGUCGUCGGcG-ACGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 39019 0.68 0.204853
Target:  5'- uGGCGGcCGCGGaucgguguacgccCAGcCCGCUGCuGCGCu -3'
miRNA:   3'- cCCGCC-GCGUC-------------GUC-GGCGACG-UGUGu -5'
26782 5' -62.1 NC_005808.1 + 8748 0.68 0.204316
Target:  5'- aGGGCGcGCGC-GUAuucacguGCCGCUucgggcaGCACGCGg -3'
miRNA:   3'- -CCCGC-CGCGuCGU-------CGGCGA-------CGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 27451 0.68 0.200064
Target:  5'- aGGCccuGGCGCugguaugccAGCGcGCCGC-GCACGCAc -3'
miRNA:   3'- cCCG---CCGCG---------UCGU-CGGCGaCGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 29953 0.68 0.200064
Target:  5'- aGGUGGUGCuuGUcGUCGCgGCGCACGa -3'
miRNA:   3'- cCCGCCGCGu-CGuCGGCGaCGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 27794 0.68 0.194858
Target:  5'- -aGCGcGCGCcgcGCAGCCGCaGCACGu- -3'
miRNA:   3'- ccCGC-CGCGu--CGUCGGCGaCGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 8739 0.68 0.194858
Target:  5'- cGGCgGGCGCGGCGcuaCCGUcaacauggaauuUGCGCGCGg -3'
miRNA:   3'- cCCG-CCGCGUCGUc--GGCG------------ACGUGUGU- -5'
26782 5' -62.1 NC_005808.1 + 21426 0.69 0.191792
Target:  5'- aGGCcGCGCAGCAgGCCGCgcuguugaaccaggGCGCGg- -3'
miRNA:   3'- cCCGcCGCGUCGU-CGGCGa-------------CGUGUgu -5'
26782 5' -62.1 NC_005808.1 + 36259 0.69 0.189771
Target:  5'- cGGGCcgGGCGCuuuggcuggGGCGgaacgcGCCGCgucuUGCACGCAc -3'
miRNA:   3'- -CCCG--CCGCG---------UCGU------CGGCG----ACGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.