miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 5898 0.68 0.264294
Target:  5'- uCGCCaGCGuGGU-GAGUGUGCCGCCGGGa -3'
miRNA:   3'- -GCGG-CGU-CUAgCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 18064 0.7 0.194199
Target:  5'- cCGgCGCGGGgugCGuGCugGgCCGCCGAa -3'
miRNA:   3'- -GCgGCGUCUa--GCuCGugC-GGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 3739 0.7 0.199357
Target:  5'- aCGCCGguGGU-GGGCACgucgguGCCGCCGc- -3'
miRNA:   3'- -GCGGCguCUAgCUCGUG------CGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 27808 0.7 0.215552
Target:  5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3'
miRNA:   3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 32858 0.7 0.221196
Target:  5'- gGCCGCAGA-CG-GU-CGgCGCCGAGa -3'
miRNA:   3'- gCGGCGUCUaGCuCGuGCgGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 3877 0.69 0.226965
Target:  5'- uCGCUGUAGGcCGcGCugccguCGCCGCCGAa -3'
miRNA:   3'- -GCGGCGUCUaGCuCGu-----GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 23338 0.69 0.232861
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 29404 0.69 0.24504
Target:  5'- gGCCaGCAGAaucUUGGGCGCGuuGCCc-- -3'
miRNA:   3'- gCGG-CGUCU---AGCUCGUGCggCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 1707 0.69 0.24504
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGUCUaGCuCGUGCGGCgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 25745 0.71 0.189158
Target:  5'- gGCgGCAGcacgcUGGGCGCGCUGCUGGGc -3'
miRNA:   3'- gCGgCGUCua---GCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 36980 0.71 0.17942
Target:  5'- gCGCCGCGccacGcgCGAaacGCACcCCGCCGAGu -3'
miRNA:   3'- -GCGGCGU----CuaGCU---CGUGcGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 604 0.71 0.17472
Target:  5'- cCGCCuGCGGGUCGgccAGCAgCGCCGUgGAc -3'
miRNA:   3'- -GCGG-CGUCUAGC---UCGU-GCGGCGgCUc -5'
26786 5' -60.6 NC_005808.1 + 32347 0.8 0.037585
Target:  5'- cCGCCGCccAGGUCGcuGCGguCGCCGCCGAGg -3'
miRNA:   3'- -GCGGCG--UCUAGCu-CGU--GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 19951 0.79 0.043886
Target:  5'- gGCCGUGGAcaggcaacccagguuUCGGGCAgGCCGCCGAu -3'
miRNA:   3'- gCGGCGUCU---------------AGCUCGUgCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 38897 0.76 0.08105
Target:  5'- gCGCCGCAuGGggcAGCGCGUCGCCGGGu -3'
miRNA:   3'- -GCGGCGU-CUagcUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 34890 0.75 0.085727
Target:  5'- gCGCUGCAGuucAUCG-GCAagccgGCCGCCGAGg -3'
miRNA:   3'- -GCGGCGUC---UAGCuCGUg----CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 11584 0.74 0.107125
Target:  5'- uGCCGCccaGGGcCGccGGCugGCCGCCGGGc -3'
miRNA:   3'- gCGGCG---UCUaGC--UCGugCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 4036 0.74 0.116375
Target:  5'- uGCCGCgcGGGUCGAGCGCa--GCCGGGc -3'
miRNA:   3'- gCGGCG--UCUAGCUCGUGcggCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 28476 0.71 0.169677
Target:  5'- uCGCCGUAGugGUCGAGCAucCGCUcggcauuGCCGAa -3'
miRNA:   3'- -GCGGCGUC--UAGCUCGU--GCGG-------CGGCUc -5'
26786 5' -60.6 NC_005808.1 + 26229 0.71 0.17472
Target:  5'- uGCgCGCAGuuUUGcGCGCGUCGCCGAa -3'
miRNA:   3'- gCG-GCGUCu-AGCuCGUGCGGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.