miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 95 0.66 0.361904
Target:  5'- aGCCauuucCAGAUCGuucuGCGCGCCGUCc-- -3'
miRNA:   3'- gCGGc----GUCUAGCu---CGUGCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 604 0.71 0.17472
Target:  5'- cCGCCuGCGGGUCGgccAGCAgCGCCGUgGAc -3'
miRNA:   3'- -GCGG-CGUCUAGC---UCGU-GCGGCGgCUc -5'
26786 5' -60.6 NC_005808.1 + 778 0.68 0.291851
Target:  5'- uGCCGguCAGAUCGGGC-CGCUGCg--- -3'
miRNA:   3'- gCGGC--GUCUAGCUCGuGCGGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 1128 0.67 0.324702
Target:  5'- uGCCGUcGAUCauGAGCAgcggccguuugcgcuCGCCGUCGAu -3'
miRNA:   3'- gCGGCGuCUAG--CUCGU---------------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 1707 0.69 0.24504
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGUCUaGCuCGUGCGGCgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 1943 0.7 0.221196
Target:  5'- uCGuCUGCGGGuucuggUCGAGCGCGCgGCCcuGGGg -3'
miRNA:   3'- -GC-GGCGUCU------AGCUCGUGCGgCGG--CUC- -5'
26786 5' -60.6 NC_005808.1 + 2954 0.67 0.327039
Target:  5'- gCGCgGCAcGUCGAGCACGUgaucgaugacagguUGCUGAu -3'
miRNA:   3'- -GCGgCGUcUAGCUCGUGCG--------------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 3609 0.66 0.353569
Target:  5'- gGCCGUguauucGGAUgCGccauuCACGCCGCCGAa -3'
miRNA:   3'- gCGGCG------UCUA-GCuc---GUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 3739 0.7 0.199357
Target:  5'- aCGCCGguGGU-GGGCACgucgguGCCGCCGc- -3'
miRNA:   3'- -GCGGCguCUAgCUCGUG------CGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 3877 0.69 0.226965
Target:  5'- uCGCUGUAGGcCGcGCugccguCGCCGCCGAa -3'
miRNA:   3'- -GCGGCGUCUaGCuCGu-----GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 4036 0.74 0.116375
Target:  5'- uGCCGCgcGGGUCGAGCGCa--GCCGGGc -3'
miRNA:   3'- gCGGCG--UCUAGCUCGUGcggCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 5317 0.68 0.2778
Target:  5'- gGCCGUAGGccgCGAGCACGUgGCg--- -3'
miRNA:   3'- gCGGCGUCUa--GCUCGUGCGgCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 5559 0.66 0.396583
Target:  5'- cCGCCaCGGuAUCGAcggcgccaacGCugGCCGCCa-- -3'
miRNA:   3'- -GCGGcGUC-UAGCU----------CGugCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 5734 0.67 0.313959
Target:  5'- uGUCGCacAGAUCGcccAGCGCGCCGggcagCGAGu -3'
miRNA:   3'- gCGGCG--UCUAGC---UCGUGCGGCg----GCUC- -5'
26786 5' -60.6 NC_005808.1 + 5809 0.66 0.387714
Target:  5'- gCGCCaGCGGAuagUCGGGCAUGgCgUGCCGcAGc -3'
miRNA:   3'- -GCGG-CGUCU---AGCUCGUGC-G-GCGGC-UC- -5'
26786 5' -60.6 NC_005808.1 + 5898 0.68 0.264294
Target:  5'- uCGCCaGCGuGGU-GAGUGUGCCGCCGGGa -3'
miRNA:   3'- -GCGG-CGU-CUAgCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 5905 0.7 0.194199
Target:  5'- -aCCGCAGAUCGuccGGCAucuuuuCGCCGCUGGc -3'
miRNA:   3'- gcGGCGUCUAGC---UCGU------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 7292 0.66 0.378977
Target:  5'- gGCCGUAGugcUCGcGGaugGCGCCGUCGAu -3'
miRNA:   3'- gCGGCGUCu--AGC-UCg--UGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 8373 0.66 0.361904
Target:  5'- cCGCCGCGcucGAaucuUCGAGaauCGCCGCCc-- -3'
miRNA:   3'- -GCGGCGU---CU----AGCUCgu-GCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 8435 0.67 0.345372
Target:  5'- gCGUCGCGGAacaUCG-GCGCGaugucggCGUCGAGg -3'
miRNA:   3'- -GCGGCGUCU---AGCuCGUGCg------GCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.