miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 35054 1.07 0.000313
Target:  5'- gCGCCGCAGAUCGAGCACGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGUCUAGCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33385 0.85 0.015776
Target:  5'- gCGCCGCAGAaCGuGCgccGCGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGUCUaGCuCG---UGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 11165 0.83 0.025096
Target:  5'- aCGCCGCAGAUCGuGGCGuCGCCGuuGAu -3'
miRNA:   3'- -GCGGCGUCUAGC-UCGU-GCGGCggCUc -5'
26786 5' -60.6 NC_005808.1 + 32347 0.8 0.037585
Target:  5'- cCGCCGCccAGGUCGcuGCGguCGCCGCCGAGg -3'
miRNA:   3'- -GCGGCG--UCUAGCu-CGU--GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 42103 0.8 0.038681
Target:  5'- cCGCCGCGGcgC-AGUAUGCUGCCGAGg -3'
miRNA:   3'- -GCGGCGUCuaGcUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33682 0.8 0.040967
Target:  5'- aCGCCcgaAGccAUCGAGCGCGCCGCCGAu -3'
miRNA:   3'- -GCGGcg-UC--UAGCUCGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 19951 0.79 0.043886
Target:  5'- gGCCGUGGAcaggcaacccagguuUCGGGCAgGCCGCCGAu -3'
miRNA:   3'- gCGGCGUCU---------------AGCUCGUgCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 38897 0.76 0.08105
Target:  5'- gCGCCGCAuGGggcAGCGCGUCGCCGGGu -3'
miRNA:   3'- -GCGGCGU-CUagcUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 34890 0.75 0.085727
Target:  5'- gCGCUGCAGuucAUCG-GCAagccgGCCGCCGAGg -3'
miRNA:   3'- -GCGGCGUC---UAGCuCGUg----CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 39023 0.75 0.095862
Target:  5'- gGCCGCGGAUCGGuGUACGCCcaGCCc-- -3'
miRNA:   3'- gCGGCGUCUAGCU-CGUGCGG--CGGcuc -5'
26786 5' -60.6 NC_005808.1 + 14524 0.74 0.101628
Target:  5'- aCGCCGCGGccaccugcccgcuguUCGAGCAgacCGUCGCCGAc -3'
miRNA:   3'- -GCGGCGUCu--------------AGCUCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 11584 0.74 0.107125
Target:  5'- uGCCGCccaGGGcCGccGGCugGCCGCCGGGc -3'
miRNA:   3'- gCGGCG---UCUaGC--UCGugCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 4036 0.74 0.116375
Target:  5'- uGCCGCgcGGGUCGAGCGCa--GCCGGGc -3'
miRNA:   3'- gCGGCG--UCUAGCUCGUGcggCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 16895 0.74 0.116375
Target:  5'- cCGCCGCGGGgcugguaUGAGCAgCGuuGCCGAa -3'
miRNA:   3'- -GCGGCGUCUa------GCUCGU-GCggCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 27764 0.74 0.116375
Target:  5'- gGCCGCcaacGGcAUCGAccugggcgaagGCAgCGCCGCCGAGg -3'
miRNA:   3'- gCGGCG----UC-UAGCU-----------CGU-GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33923 0.72 0.161272
Target:  5'- aCGCCG-AGGUCGcgcGGCACGCaauGCCGAc -3'
miRNA:   3'- -GCGGCgUCUAGC---UCGUGCGg--CGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16979 0.71 0.165648
Target:  5'- gCGCUGCuGG-CGAcCGCGCCGCCGuGg -3'
miRNA:   3'- -GCGGCGuCUaGCUcGUGCGGCGGCuC- -5'
26786 5' -60.6 NC_005808.1 + 28476 0.71 0.169677
Target:  5'- uCGCCGUAGugGUCGAGCAucCGCUcggcauuGCCGAa -3'
miRNA:   3'- -GCGGCGUC--UAGCUCGU--GCGG-------CGGCUc -5'
26786 5' -60.6 NC_005808.1 + 604 0.71 0.17472
Target:  5'- cCGCCuGCGGGUCGgccAGCAgCGCCGUgGAc -3'
miRNA:   3'- -GCGG-CGUCUAGC---UCGU-GCGGCGgCUc -5'
26786 5' -60.6 NC_005808.1 + 26229 0.71 0.17472
Target:  5'- uGCgCGCAGuuUUGcGCGCGUCGCCGAa -3'
miRNA:   3'- gCG-GCGUCu-AGCuCGUGCGGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.