miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 37844 0.66 0.405581
Target:  5'- aCGCCG-AGAacaUCGcGGC-CGUgGCCGAGa -3'
miRNA:   3'- -GCGGCgUCU---AGC-UCGuGCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 9566 0.66 0.405581
Target:  5'- uCGCCGguGG-CGAGCAUcCgGUCGAa -3'
miRNA:   3'- -GCGGCguCUaGCUCGUGcGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 39842 0.66 0.405581
Target:  5'- uGUCgGCAGugGUCG-GCACGCCcgagcagcGCCGGGc -3'
miRNA:   3'- gCGG-CGUC--UAGCuCGUGCGG--------CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 35823 0.66 0.405581
Target:  5'- gCGCUGaacCAGGccaUCGAGCAgGUCGCCaAGg -3'
miRNA:   3'- -GCGGC---GUCU---AGCUCGUgCGGCGGcUC- -5'
26786 5' -60.6 NC_005808.1 + 19726 0.66 0.396583
Target:  5'- gCGCCGCGcAUCGcccugcuugGGCugGuuGCCGu- -3'
miRNA:   3'- -GCGGCGUcUAGC---------UCGugCggCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 23418 0.66 0.396583
Target:  5'- aGCgCGCcGGUCaGuGCgACGCCGgCCGGGa -3'
miRNA:   3'- gCG-GCGuCUAG-CuCG-UGCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 5559 0.66 0.396583
Target:  5'- cCGCCaCGGuAUCGAcggcgccaacGCugGCCGCCa-- -3'
miRNA:   3'- -GCGGcGUC-UAGCU----------CGugCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 25514 0.66 0.396583
Target:  5'- gGcCCGCgaugAGGUCGGuuuuGC-CGCCGCCGGc -3'
miRNA:   3'- gC-GGCG----UCUAGCU----CGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5809 0.66 0.387714
Target:  5'- gCGCCaGCGGAuagUCGGGCAUGgCgUGCCGcAGc -3'
miRNA:   3'- -GCGG-CGUCU---AGCUCGUGC-G-GCGGC-UC- -5'
26786 5' -60.6 NC_005808.1 + 19601 0.66 0.387714
Target:  5'- -uCUGCGGGUCGAuCuuGCCGuCCGGGg -3'
miRNA:   3'- gcGGCGUCUAGCUcGugCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 28558 0.66 0.378977
Target:  5'- gGCCGcCGGccAUCGcGGCGCGCaCGUCGGc -3'
miRNA:   3'- gCGGC-GUC--UAGC-UCGUGCG-GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 7292 0.66 0.378977
Target:  5'- gGCCGUAGugcUCGcGGaugGCGCCGUCGAu -3'
miRNA:   3'- gCGGCGUCu--AGC-UCg--UGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 34964 0.66 0.370373
Target:  5'- cCGgCGUGGGUCGAGcCGCGCCcCCuGAc -3'
miRNA:   3'- -GCgGCGUCUAGCUC-GUGCGGcGG-CUc -5'
26786 5' -60.6 NC_005808.1 + 27707 0.66 0.370373
Target:  5'- gCGCCgGCAG--CG-GCuCGCCGCCGGu -3'
miRNA:   3'- -GCGG-CGUCuaGCuCGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 35221 0.66 0.361904
Target:  5'- uCGCCGCGGu----GCcCGCCGCUGGa -3'
miRNA:   3'- -GCGGCGUCuagcuCGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16847 0.66 0.361904
Target:  5'- cCGCCcaGCAGcgCGcccAGCGugcUGCCGCCGGu -3'
miRNA:   3'- -GCGG--CGUCuaGC---UCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 95 0.66 0.361904
Target:  5'- aGCCauuucCAGAUCGuucuGCGCGCCGUCc-- -3'
miRNA:   3'- gCGGc----GUCUAGCu---CGUGCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 8373 0.66 0.361904
Target:  5'- cCGCCGCGcucGAaucuUCGAGaauCGCCGCCc-- -3'
miRNA:   3'- -GCGGCGU---CU----AGCUCgu-GCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 18577 0.66 0.353569
Target:  5'- gCGCuCGCGGugaCGGcCugGCCGuCCGAGa -3'
miRNA:   3'- -GCG-GCGUCua-GCUcGugCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 16570 0.66 0.353569
Target:  5'- aCGuuGUAGcgCGA-CGCGCCGgaCGAGg -3'
miRNA:   3'- -GCggCGUCuaGCUcGUGCGGCg-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.