miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 18137 0.71 0.17472
Target:  5'- aGCaGCAGGUCGucGGCgucaAUGUCGCCGAGg -3'
miRNA:   3'- gCGgCGUCUAGC--UCG----UGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 36980 0.71 0.17942
Target:  5'- gCGCCGCGccacGcgCGAaacGCACcCCGCCGAGu -3'
miRNA:   3'- -GCGGCGU----CuaGCU---CGUGcGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 25745 0.71 0.189158
Target:  5'- gGCgGCAGcacgcUGGGCGCGCUGCUGGGc -3'
miRNA:   3'- gCGgCGUCua---GCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 19108 0.71 0.189158
Target:  5'- uGCCGCAGGUCGAGauucccacgGCGCaccuguuccaCGCCGGc -3'
miRNA:   3'- gCGGCGUCUAGCUCg--------UGCG----------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5905 0.7 0.194199
Target:  5'- -aCCGCAGAUCGuccGGCAucuuuuCGCCGCUGGc -3'
miRNA:   3'- gcGGCGUCUAGC---UCGU------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 18064 0.7 0.194199
Target:  5'- cCGgCGCGGGgugCGuGCugGgCCGCCGAa -3'
miRNA:   3'- -GCgGCGUCUa--GCuCGugC-GGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16792 0.7 0.199357
Target:  5'- cCGgUGCAGAUcaacgauacCGAGCGCGCCGCgCGc- -3'
miRNA:   3'- -GCgGCGUCUA---------GCUCGUGCGGCG-GCuc -5'
26786 5' -60.6 NC_005808.1 + 3739 0.7 0.199357
Target:  5'- aCGCCGguGGU-GGGCACgucgguGCCGCCGc- -3'
miRNA:   3'- -GCGGCguCUAgCUCGUG------CGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 27808 0.7 0.215552
Target:  5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3'
miRNA:   3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 1943 0.7 0.221196
Target:  5'- uCGuCUGCGGGuucuggUCGAGCGCGCgGCCcuGGGg -3'
miRNA:   3'- -GC-GGCGUCU------AGCUCGUGCGgCGG--CUC- -5'
26786 5' -60.6 NC_005808.1 + 32858 0.7 0.221196
Target:  5'- gGCCGCAGA-CG-GU-CGgCGCCGAGa -3'
miRNA:   3'- gCGGCGUCUaGCuCGuGCgGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 3877 0.69 0.226965
Target:  5'- uCGCUGUAGGcCGcGCugccguCGCCGCCGAa -3'
miRNA:   3'- -GCGGCGUCUaGCuCGu-----GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 23338 0.69 0.232861
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 29404 0.69 0.24504
Target:  5'- gGCCaGCAGAaucUUGGGCGCGuuGCCc-- -3'
miRNA:   3'- gCGG-CGUCU---AGCUCGUGCggCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 1707 0.69 0.24504
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGUCUaGCuCGUGCGGCgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 31847 0.69 0.251326
Target:  5'- gGCCGaa-GUCGAGCGCGCCcuuGgCGAGc -3'
miRNA:   3'- gCGGCgucUAGCUCGUGCGG---CgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 9902 0.69 0.257743
Target:  5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3'
miRNA:   3'- gCG-GCGUCuaGCUCGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 33279 0.69 0.257743
Target:  5'- cCGCCGCGccGA-CGuGCGCcgccagGUCGCCGAGg -3'
miRNA:   3'- -GCGGCGU--CUaGCuCGUG------CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 30125 0.68 0.264294
Target:  5'- gGCCGCGcca-GAaCACGCCGCCGGc -3'
miRNA:   3'- gCGGCGUcuagCUcGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5898 0.68 0.264294
Target:  5'- uCGCCaGCGuGGU-GAGUGUGCCGCCGGGa -3'
miRNA:   3'- -GCGG-CGU-CUAgCUCGUGCGGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.