miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 9566 0.66 0.405581
Target:  5'- uCGCCGguGG-CGAGCAUcCgGUCGAa -3'
miRNA:   3'- -GCGGCguCUaGCUCGUGcGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 37844 0.66 0.405581
Target:  5'- aCGCCG-AGAacaUCGcGGC-CGUgGCCGAGa -3'
miRNA:   3'- -GCGGCgUCU---AGC-UCGuGCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 35823 0.66 0.405581
Target:  5'- gCGCUGaacCAGGccaUCGAGCAgGUCGCCaAGg -3'
miRNA:   3'- -GCGGC---GUCU---AGCUCGUgCGGCGGcUC- -5'
26786 5' -60.6 NC_005808.1 + 16149 0.67 0.313959
Target:  5'- uGCCG-AGGUCGAGCGCauCCGCgaacugcaCGAGg -3'
miRNA:   3'- gCGGCgUCUAGCUCGUGc-GGCG--------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 8435 0.67 0.345372
Target:  5'- gCGUCGCGGAacaUCG-GCGCGaugucggCGUCGAGg -3'
miRNA:   3'- -GCGGCGUCU---AGCuCGUGCg------GCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 22575 0.67 0.345372
Target:  5'- uGCUGCcuguGAUgCaGGCGCGCCauGCCGAGc -3'
miRNA:   3'- gCGGCGu---CUA-GcUCGUGCGG--CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 16541 0.67 0.345372
Target:  5'- uCGCCgaGCGcAUgGAGCGCGCcCGCCGc- -3'
miRNA:   3'- -GCGG--CGUcUAgCUCGUGCG-GCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 22903 0.67 0.337312
Target:  5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3'
miRNA:   3'- gCGGCGUcUAGCUCGU--GCGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 9789 0.67 0.337312
Target:  5'- aCGCgGcCAGGUCGcGCACGCCGaaCCa-- -3'
miRNA:   3'- -GCGgC-GUCUAGCuCGUGCGGC--GGcuc -5'
26786 5' -60.6 NC_005808.1 + 22072 0.67 0.329389
Target:  5'- gGUCGCGG-UCG-GCGCGCgGCuCGAu -3'
miRNA:   3'- gCGGCGUCuAGCuCGUGCGgCG-GCUc -5'
26786 5' -60.6 NC_005808.1 + 23938 0.67 0.313959
Target:  5'- gGCCGgGGG-CGGGCGcCGCCcCCGAu -3'
miRNA:   3'- gCGGCgUCUaGCUCGU-GCGGcGGCUc -5'
26786 5' -60.6 NC_005808.1 + 1128 0.67 0.324702
Target:  5'- uGCCGUcGAUCauGAGCAgcggccguuugcgcuCGCCGUCGAu -3'
miRNA:   3'- gCGGCGuCUAG--CUCGU---------------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 2954 0.67 0.327039
Target:  5'- gCGCgGCAcGUCGAGCACGUgaucgaugacagguUGCUGAu -3'
miRNA:   3'- -GCGgCGUcUAGCUCGUGCG--------------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 29047 0.67 0.306452
Target:  5'- uCGCCGUGGGcacCGAGuCAgGCgGCCGAc -3'
miRNA:   3'- -GCGGCGUCUa--GCUC-GUgCGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5734 0.67 0.313959
Target:  5'- uGUCGCacAGAUCGcccAGCGCGCCGggcagCGAGu -3'
miRNA:   3'- gCGGCG--UCUAGC---UCGUGCGGCg----GCUC- -5'
26786 5' -60.6 NC_005808.1 + 21831 0.67 0.313959
Target:  5'- aGCCGCGcGAugagUCGAGCGCGgCGCa--- -3'
miRNA:   3'- gCGGCGU-CU----AGCUCGUGCgGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 14026 0.67 0.337312
Target:  5'- uGCCGguGGcCGAcguGCGCGCCG-CGAu -3'
miRNA:   3'- gCGGCguCUaGCU---CGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 13326 0.67 0.313959
Target:  5'- gCGgCGUAGGcuuUCG-GCAgguCGCCGCCGAa -3'
miRNA:   3'- -GCgGCGUCU---AGCuCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 24323 0.67 0.317001
Target:  5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3'
miRNA:   3'- gCGGCGUCUAG--------CUCG-UGCGG---------------CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 31904 0.68 0.291851
Target:  5'- gGCCG-AGGcCGuGCGCGCUGCCGu- -3'
miRNA:   3'- gCGGCgUCUaGCuCGUGCGGCGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.