miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 8632 0.68 0.291851
Target:  5'- cCGCUGCGGuggCGAGguCGCCgGCCu-- -3'
miRNA:   3'- -GCGGCGUCua-GCUCguGCGG-CGGcuc -5'
26786 5' -60.6 NC_005808.1 + 9566 0.66 0.405581
Target:  5'- uCGCCGguGG-CGAGCAUcCgGUCGAa -3'
miRNA:   3'- -GCGGCguCUaGCUCGUGcGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 9789 0.67 0.337312
Target:  5'- aCGCgGcCAGGUCGcGCACGCCGaaCCa-- -3'
miRNA:   3'- -GCGgC-GUCUAGCuCGUGCGGC--GGcuc -5'
26786 5' -60.6 NC_005808.1 + 9902 0.69 0.257743
Target:  5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3'
miRNA:   3'- gCG-GCGUCuaGCUCGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 11165 0.83 0.025096
Target:  5'- aCGCCGCAGAUCGuGGCGuCGCCGuuGAu -3'
miRNA:   3'- -GCGGCGUCUAGC-UCGU-GCGGCggCUc -5'
26786 5' -60.6 NC_005808.1 + 11584 0.74 0.107125
Target:  5'- uGCCGCccaGGGcCGccGGCugGCCGCCGGGc -3'
miRNA:   3'- gCGGCG---UCUaGC--UCGugCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 13326 0.67 0.313959
Target:  5'- gCGgCGUAGGcuuUCG-GCAgguCGCCGCCGAa -3'
miRNA:   3'- -GCgGCGUCU---AGCuCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 14026 0.67 0.337312
Target:  5'- uGCCGguGGcCGAcguGCGCGCCG-CGAu -3'
miRNA:   3'- gCGGCguCUaGCU---CGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 14061 0.68 0.298353
Target:  5'- gGCCGCaAGGUCGuGCcguucaacaagcaGCGCCGgcagaugaCCGAGu -3'
miRNA:   3'- gCGGCG-UCUAGCuCG-------------UGCGGC--------GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 14524 0.74 0.101628
Target:  5'- aCGCCGCGGccaccugcccgcuguUCGAGCAgacCGUCGCCGAc -3'
miRNA:   3'- -GCGGCGUCu--------------AGCUCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 15090 0.68 0.284757
Target:  5'- gCGCCG-AGA---AGCugGCgGCCGAGg -3'
miRNA:   3'- -GCGGCgUCUagcUCGugCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 16149 0.67 0.313959
Target:  5'- uGCCG-AGGUCGAGCGCauCCGCgaacugcaCGAGg -3'
miRNA:   3'- gCGGCgUCUAGCUCGUGc-GGCG--------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 16541 0.67 0.345372
Target:  5'- uCGCCgaGCGcAUgGAGCGCGCcCGCCGc- -3'
miRNA:   3'- -GCGG--CGUcUAgCUCGUGCG-GCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 16570 0.66 0.353569
Target:  5'- aCGuuGUAGcgCGA-CGCGCCGgaCGAGg -3'
miRNA:   3'- -GCggCGUCuaGCUcGUGCGGCg-GCUC- -5'
26786 5' -60.6 NC_005808.1 + 16792 0.7 0.199357
Target:  5'- cCGgUGCAGAUcaacgauacCGAGCGCGCCGCgCGc- -3'
miRNA:   3'- -GCgGCGUCUA---------GCUCGUGCGGCG-GCuc -5'
26786 5' -60.6 NC_005808.1 + 16847 0.66 0.361904
Target:  5'- cCGCCcaGCAGcgCGcccAGCGugcUGCCGCCGGu -3'
miRNA:   3'- -GCGG--CGUCuaGC---UCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16895 0.74 0.116375
Target:  5'- cCGCCGCGGGgcugguaUGAGCAgCGuuGCCGAa -3'
miRNA:   3'- -GCGGCGUCUa------GCUCGU-GCggCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16979 0.71 0.165648
Target:  5'- gCGCUGCuGG-CGAcCGCGCCGCCGuGg -3'
miRNA:   3'- -GCGGCGuCUaGCUcGUGCGGCGGCuC- -5'
26786 5' -60.6 NC_005808.1 + 18064 0.7 0.194199
Target:  5'- cCGgCGCGGGgugCGuGCugGgCCGCCGAa -3'
miRNA:   3'- -GCgGCGUCUa--GCuCGugC-GGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 18137 0.71 0.17472
Target:  5'- aGCaGCAGGUCGucGGCgucaAUGUCGCCGAGg -3'
miRNA:   3'- gCGgCGUCUAGC--UCG----UGCGGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.