Results 21 - 40 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 8632 | 0.68 | 0.291851 |
Target: 5'- cCGCUGCGGuggCGAGguCGCCgGCCu-- -3' miRNA: 3'- -GCGGCGUCua-GCUCguGCGG-CGGcuc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 9566 | 0.66 | 0.405581 |
Target: 5'- uCGCCGguGG-CGAGCAUcCgGUCGAa -3' miRNA: 3'- -GCGGCguCUaGCUCGUGcGgCGGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 9789 | 0.67 | 0.337312 |
Target: 5'- aCGCgGcCAGGUCGcGCACGCCGaaCCa-- -3' miRNA: 3'- -GCGgC-GUCUAGCuCGUGCGGC--GGcuc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 9902 | 0.69 | 0.257743 |
Target: 5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3' miRNA: 3'- gCG-GCGUCuaGCUCGUGCGGCgGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 11165 | 0.83 | 0.025096 |
Target: 5'- aCGCCGCAGAUCGuGGCGuCGCCGuuGAu -3' miRNA: 3'- -GCGGCGUCUAGC-UCGU-GCGGCggCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 11584 | 0.74 | 0.107125 |
Target: 5'- uGCCGCccaGGGcCGccGGCugGCCGCCGGGc -3' miRNA: 3'- gCGGCG---UCUaGC--UCGugCGGCGGCUC- -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 13326 | 0.67 | 0.313959 |
Target: 5'- gCGgCGUAGGcuuUCG-GCAgguCGCCGCCGAa -3' miRNA: 3'- -GCgGCGUCU---AGCuCGU---GCGGCGGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 14026 | 0.67 | 0.337312 |
Target: 5'- uGCCGguGGcCGAcguGCGCGCCG-CGAu -3' miRNA: 3'- gCGGCguCUaGCU---CGUGCGGCgGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 14061 | 0.68 | 0.298353 |
Target: 5'- gGCCGCaAGGUCGuGCcguucaacaagcaGCGCCGgcagaugaCCGAGu -3' miRNA: 3'- gCGGCG-UCUAGCuCG-------------UGCGGC--------GGCUC- -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 14524 | 0.74 | 0.101628 |
Target: 5'- aCGCCGCGGccaccugcccgcuguUCGAGCAgacCGUCGCCGAc -3' miRNA: 3'- -GCGGCGUCu--------------AGCUCGU---GCGGCGGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 15090 | 0.68 | 0.284757 |
Target: 5'- gCGCCG-AGA---AGCugGCgGCCGAGg -3' miRNA: 3'- -GCGGCgUCUagcUCGugCGgCGGCUC- -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16149 | 0.67 | 0.313959 |
Target: 5'- uGCCG-AGGUCGAGCGCauCCGCgaacugcaCGAGg -3' miRNA: 3'- gCGGCgUCUAGCUCGUGc-GGCG--------GCUC- -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16541 | 0.67 | 0.345372 |
Target: 5'- uCGCCgaGCGcAUgGAGCGCGCcCGCCGc- -3' miRNA: 3'- -GCGG--CGUcUAgCUCGUGCG-GCGGCuc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16570 | 0.66 | 0.353569 |
Target: 5'- aCGuuGUAGcgCGA-CGCGCCGgaCGAGg -3' miRNA: 3'- -GCggCGUCuaGCUcGUGCGGCg-GCUC- -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16792 | 0.7 | 0.199357 |
Target: 5'- cCGgUGCAGAUcaacgauacCGAGCGCGCCGCgCGc- -3' miRNA: 3'- -GCgGCGUCUA---------GCUCGUGCGGCG-GCuc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16847 | 0.66 | 0.361904 |
Target: 5'- cCGCCcaGCAGcgCGcccAGCGugcUGCCGCCGGu -3' miRNA: 3'- -GCGG--CGUCuaGC---UCGU---GCGGCGGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16895 | 0.74 | 0.116375 |
Target: 5'- cCGCCGCGGGgcugguaUGAGCAgCGuuGCCGAa -3' miRNA: 3'- -GCGGCGUCUa------GCUCGU-GCggCGGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 16979 | 0.71 | 0.165648 |
Target: 5'- gCGCUGCuGG-CGAcCGCGCCGCCGuGg -3' miRNA: 3'- -GCGGCGuCUaGCUcGUGCGGCGGCuC- -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 18064 | 0.7 | 0.194199 |
Target: 5'- cCGgCGCGGGgugCGuGCugGgCCGCCGAa -3' miRNA: 3'- -GCgGCGUCUa--GCuCGugC-GGCGGCUc -5' |
|||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 18137 | 0.71 | 0.17472 |
Target: 5'- aGCaGCAGGUCGucGGCgucaAUGUCGCCGAGg -3' miRNA: 3'- gCGgCGUCUAGC--UCG----UGCGGCGGCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home