miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 31847 0.69 0.251326
Target:  5'- gGCCGaa-GUCGAGCGCGCCcuuGgCGAGc -3'
miRNA:   3'- gCGGCgucUAGCUCGUGCGG---CgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 30125 0.68 0.264294
Target:  5'- gGCCGCGcca-GAaCACGCCGCCGGc -3'
miRNA:   3'- gCGGCGUcuagCUcGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 29541 0.66 0.353569
Target:  5'- gGCCGCAGAg-GAcaccCACGCCGUgcuCGGGg -3'
miRNA:   3'- gCGGCGUCUagCUc---GUGCGGCG---GCUC- -5'
26786 5' -60.6 NC_005808.1 + 29404 0.69 0.24504
Target:  5'- gGCCaGCAGAaucUUGGGCGCGuuGCCc-- -3'
miRNA:   3'- gCGG-CGUCU---AGCUCGUGCggCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 29047 0.67 0.306452
Target:  5'- uCGCCGUGGGcacCGAGuCAgGCgGCCGAc -3'
miRNA:   3'- -GCGGCGUCUa--GCUC-GUgCGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 28558 0.66 0.378977
Target:  5'- gGCCGcCGGccAUCGcGGCGCGCaCGUCGGc -3'
miRNA:   3'- gCGGC-GUC--UAGC-UCGUGCG-GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 28476 0.71 0.169677
Target:  5'- uCGCCGUAGugGUCGAGCAucCGCUcggcauuGCCGAa -3'
miRNA:   3'- -GCGGCGUC--UAGCUCGU--GCGG-------CGGCUc -5'
26786 5' -60.6 NC_005808.1 + 28156 0.68 0.291851
Target:  5'- uGCCGgugguCAGAUCGAcCACGCCGuuGc- -3'
miRNA:   3'- gCGGC-----GUCUAGCUcGUGCGGCggCuc -5'
26786 5' -60.6 NC_005808.1 + 27808 0.7 0.215552
Target:  5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3'
miRNA:   3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 27764 0.74 0.116375
Target:  5'- gGCCGCcaacGGcAUCGAccugggcgaagGCAgCGCCGCCGAGg -3'
miRNA:   3'- gCGGCG----UC-UAGCU-----------CGU-GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 27707 0.66 0.370373
Target:  5'- gCGCCgGCAG--CG-GCuCGCCGCCGGu -3'
miRNA:   3'- -GCGG-CGUCuaGCuCGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 27445 0.68 0.284757
Target:  5'- gGCCGCAGGcccuggCGcugguaugccAGCGCGCCGCgcacgcaccacgCGAGg -3'
miRNA:   3'- gCGGCGUCUa-----GC----------UCGUGCGGCG------------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 26229 0.71 0.17472
Target:  5'- uGCgCGCAGuuUUGcGCGCGUCGCCGAa -3'
miRNA:   3'- gCG-GCGUCu-AGCuCGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 25745 0.71 0.189158
Target:  5'- gGCgGCAGcacgcUGGGCGCGCUGCUGGGc -3'
miRNA:   3'- gCGgCGUCua---GCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 25514 0.66 0.396583
Target:  5'- gGcCCGCgaugAGGUCGGuuuuGC-CGCCGCCGGc -3'
miRNA:   3'- gC-GGCG----UCUAGCU----CGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 24323 0.67 0.317001
Target:  5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3'
miRNA:   3'- gCGGCGUCUAG--------CUCG-UGCGG---------------CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 23938 0.67 0.313959
Target:  5'- gGCCGgGGG-CGGGCGcCGCCcCCGAu -3'
miRNA:   3'- gCGGCgUCUaGCUCGU-GCGGcGGCUc -5'
26786 5' -60.6 NC_005808.1 + 23418 0.66 0.396583
Target:  5'- aGCgCGCcGGUCaGuGCgACGCCGgCCGGGa -3'
miRNA:   3'- gCG-GCGuCUAG-CuCG-UGCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 23338 0.69 0.232861
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 22903 0.67 0.337312
Target:  5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3'
miRNA:   3'- gCGGCGUcUAGCUCGU--GCGGCGGCuc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.