Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26786 | 5' | -60.6 | NC_005808.1 | + | 31847 | 0.69 | 0.251326 |
Target: 5'- gGCCGaa-GUCGAGCGCGCCcuuGgCGAGc -3' miRNA: 3'- gCGGCgucUAGCUCGUGCGG---CgGCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 30125 | 0.68 | 0.264294 |
Target: 5'- gGCCGCGcca-GAaCACGCCGCCGGc -3' miRNA: 3'- gCGGCGUcuagCUcGUGCGGCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 29541 | 0.66 | 0.353569 |
Target: 5'- gGCCGCAGAg-GAcaccCACGCCGUgcuCGGGg -3' miRNA: 3'- gCGGCGUCUagCUc---GUGCGGCG---GCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 29404 | 0.69 | 0.24504 |
Target: 5'- gGCCaGCAGAaucUUGGGCGCGuuGCCc-- -3' miRNA: 3'- gCGG-CGUCU---AGCUCGUGCggCGGcuc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 29047 | 0.67 | 0.306452 |
Target: 5'- uCGCCGUGGGcacCGAGuCAgGCgGCCGAc -3' miRNA: 3'- -GCGGCGUCUa--GCUC-GUgCGgCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 28558 | 0.66 | 0.378977 |
Target: 5'- gGCCGcCGGccAUCGcGGCGCGCaCGUCGGc -3' miRNA: 3'- gCGGC-GUC--UAGC-UCGUGCG-GCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 28476 | 0.71 | 0.169677 |
Target: 5'- uCGCCGUAGugGUCGAGCAucCGCUcggcauuGCCGAa -3' miRNA: 3'- -GCGGCGUC--UAGCUCGU--GCGG-------CGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 28156 | 0.68 | 0.291851 |
Target: 5'- uGCCGgugguCAGAUCGAcCACGCCGuuGc- -3' miRNA: 3'- gCGGC-----GUCUAGCUcGUGCGGCggCuc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 27808 | 0.7 | 0.215552 |
Target: 5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3' miRNA: 3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 27764 | 0.74 | 0.116375 |
Target: 5'- gGCCGCcaacGGcAUCGAccugggcgaagGCAgCGCCGCCGAGg -3' miRNA: 3'- gCGGCG----UC-UAGCU-----------CGU-GCGGCGGCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 27707 | 0.66 | 0.370373 |
Target: 5'- gCGCCgGCAG--CG-GCuCGCCGCCGGu -3' miRNA: 3'- -GCGG-CGUCuaGCuCGuGCGGCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 27445 | 0.68 | 0.284757 |
Target: 5'- gGCCGCAGGcccuggCGcugguaugccAGCGCGCCGCgcacgcaccacgCGAGg -3' miRNA: 3'- gCGGCGUCUa-----GC----------UCGUGCGGCG------------GCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 26229 | 0.71 | 0.17472 |
Target: 5'- uGCgCGCAGuuUUGcGCGCGUCGCCGAa -3' miRNA: 3'- gCG-GCGUCu-AGCuCGUGCGGCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 25745 | 0.71 | 0.189158 |
Target: 5'- gGCgGCAGcacgcUGGGCGCGCUGCUGGGc -3' miRNA: 3'- gCGgCGUCua---GCUCGUGCGGCGGCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 25514 | 0.66 | 0.396583 |
Target: 5'- gGcCCGCgaugAGGUCGGuuuuGC-CGCCGCCGGc -3' miRNA: 3'- gC-GGCG----UCUAGCU----CGuGCGGCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 24323 | 0.67 | 0.317001 |
Target: 5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3' miRNA: 3'- gCGGCGUCUAG--------CUCG-UGCGG---------------CGGCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 23938 | 0.67 | 0.313959 |
Target: 5'- gGCCGgGGG-CGGGCGcCGCCcCCGAu -3' miRNA: 3'- gCGGCgUCUaGCUCGU-GCGGcGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 23418 | 0.66 | 0.396583 |
Target: 5'- aGCgCGCcGGUCaGuGCgACGCCGgCCGGGa -3' miRNA: 3'- gCG-GCGuCUAG-CuCG-UGCGGC-GGCUC- -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 23338 | 0.69 | 0.232861 |
Target: 5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3' miRNA: 3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5' |
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26786 | 5' | -60.6 | NC_005808.1 | + | 22903 | 0.67 | 0.337312 |
Target: 5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3' miRNA: 3'- gCGGCGUcUAGCUCGU--GCGGCGGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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