miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 42103 0.8 0.038681
Target:  5'- cCGCCGCGGcgC-AGUAUGCUGCCGAGg -3'
miRNA:   3'- -GCGGCGUCuaGcUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 41510 0.66 0.353569
Target:  5'- cCGCCGCcaacaUGaAGUACGCgCGCCGGGu -3'
miRNA:   3'- -GCGGCGucua-GC-UCGUGCG-GCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 39842 0.66 0.405581
Target:  5'- uGUCgGCAGugGUCG-GCACGCCcgagcagcGCCGGGc -3'
miRNA:   3'- gCGG-CGUC--UAGCuCGUGCGG--------CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 39023 0.75 0.095862
Target:  5'- gGCCGCGGAUCGGuGUACGCCcaGCCc-- -3'
miRNA:   3'- gCGGCGUCUAGCU-CGUGCGG--CGGcuc -5'
26786 5' -60.6 NC_005808.1 + 38897 0.76 0.08105
Target:  5'- gCGCCGCAuGGggcAGCGCGUCGCCGGGu -3'
miRNA:   3'- -GCGGCGU-CUagcUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 37844 0.66 0.405581
Target:  5'- aCGCCG-AGAacaUCGcGGC-CGUgGCCGAGa -3'
miRNA:   3'- -GCGGCgUCU---AGC-UCGuGCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 37661 0.68 0.299083
Target:  5'- uCGCagacguGCAGAccgucgCGGGCAuCGCUGCCGAc -3'
miRNA:   3'- -GCGg-----CGUCUa-----GCUCGU-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 36980 0.71 0.17942
Target:  5'- gCGCCGCGccacGcgCGAaacGCACcCCGCCGAGu -3'
miRNA:   3'- -GCGGCGU----CuaGCU---CGUGcGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 35823 0.66 0.405581
Target:  5'- gCGCUGaacCAGGccaUCGAGCAgGUCGCCaAGg -3'
miRNA:   3'- -GCGGC---GUCU---AGCUCGUgCGGCGGcUC- -5'
26786 5' -60.6 NC_005808.1 + 35221 0.66 0.361904
Target:  5'- uCGCCGCGGu----GCcCGCCGCUGGa -3'
miRNA:   3'- -GCGGCGUCuagcuCGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 35054 1.07 0.000313
Target:  5'- gCGCCGCAGAUCGAGCACGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGUCUAGCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 34964 0.66 0.370373
Target:  5'- cCGgCGUGGGUCGAGcCGCGCCcCCuGAc -3'
miRNA:   3'- -GCgGCGUCUAGCUC-GUGCGGcGG-CUc -5'
26786 5' -60.6 NC_005808.1 + 34890 0.75 0.085727
Target:  5'- gCGCUGCAGuucAUCG-GCAagccgGCCGCCGAGg -3'
miRNA:   3'- -GCGGCGUC---UAGCuCGUg----CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33923 0.72 0.161272
Target:  5'- aCGCCG-AGGUCGcgcGGCACGCaauGCCGAc -3'
miRNA:   3'- -GCGGCgUCUAGC---UCGUGCGg--CGGCUc -5'
26786 5' -60.6 NC_005808.1 + 33682 0.8 0.040967
Target:  5'- aCGCCcgaAGccAUCGAGCGCGCCGCCGAu -3'
miRNA:   3'- -GCGGcg-UC--UAGCUCGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 33385 0.85 0.015776
Target:  5'- gCGCCGCAGAaCGuGCgccGCGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGUCUaGCuCG---UGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33279 0.69 0.257743
Target:  5'- cCGCCGCGccGA-CGuGCGCcgccagGUCGCCGAGg -3'
miRNA:   3'- -GCGGCGU--CUaGCuCGUG------CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 32858 0.7 0.221196
Target:  5'- gGCCGCAGA-CG-GU-CGgCGCCGAGa -3'
miRNA:   3'- gCGGCGUCUaGCuCGuGCgGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 32347 0.8 0.037585
Target:  5'- cCGCCGCccAGGUCGcuGCGguCGCCGCCGAGg -3'
miRNA:   3'- -GCGGCG--UCUAGCu-CGU--GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 31904 0.68 0.291851
Target:  5'- gGCCG-AGGcCGuGCGCGCUGCCGu- -3'
miRNA:   3'- gCGGCgUCUaGCuCGUGCGGCGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.