miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 18577 0.66 0.353569
Target:  5'- gCGCuCGCGGugaCGGcCugGCCGuCCGAGa -3'
miRNA:   3'- -GCG-GCGUCua-GCUcGugCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 19108 0.71 0.189158
Target:  5'- uGCCGCAGGUCGAGauucccacgGCGCaccuguuccaCGCCGGc -3'
miRNA:   3'- gCGGCGUCUAGCUCg--------UGCG----------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 19601 0.66 0.387714
Target:  5'- -uCUGCGGGUCGAuCuuGCCGuCCGGGg -3'
miRNA:   3'- gcGGCGUCUAGCUcGugCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 19726 0.66 0.396583
Target:  5'- gCGCCGCGcAUCGcccugcuugGGCugGuuGCCGu- -3'
miRNA:   3'- -GCGGCGUcUAGC---------UCGugCggCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 19951 0.79 0.043886
Target:  5'- gGCCGUGGAcaggcaacccagguuUCGGGCAgGCCGCCGAu -3'
miRNA:   3'- gCGGCGUCU---------------AGCUCGUgCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 21831 0.67 0.313959
Target:  5'- aGCCGCGcGAugagUCGAGCGCGgCGCa--- -3'
miRNA:   3'- gCGGCGU-CU----AGCUCGUGCgGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 22072 0.67 0.329389
Target:  5'- gGUCGCGG-UCG-GCGCGCgGCuCGAu -3'
miRNA:   3'- gCGGCGUCuAGCuCGUGCGgCG-GCUc -5'
26786 5' -60.6 NC_005808.1 + 22575 0.67 0.345372
Target:  5'- uGCUGCcuguGAUgCaGGCGCGCCauGCCGAGc -3'
miRNA:   3'- gCGGCGu---CUA-GcUCGUGCGG--CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 22903 0.67 0.337312
Target:  5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3'
miRNA:   3'- gCGGCGUcUAGCUCGU--GCGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 23338 0.69 0.232861
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 23418 0.66 0.396583
Target:  5'- aGCgCGCcGGUCaGuGCgACGCCGgCCGGGa -3'
miRNA:   3'- gCG-GCGuCUAG-CuCG-UGCGGC-GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 23938 0.67 0.313959
Target:  5'- gGCCGgGGG-CGGGCGcCGCCcCCGAu -3'
miRNA:   3'- gCGGCgUCUaGCUCGU-GCGGcGGCUc -5'
26786 5' -60.6 NC_005808.1 + 24323 0.67 0.317001
Target:  5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3'
miRNA:   3'- gCGGCGUCUAG--------CUCG-UGCGG---------------CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 25514 0.66 0.396583
Target:  5'- gGcCCGCgaugAGGUCGGuuuuGC-CGCCGCCGGc -3'
miRNA:   3'- gC-GGCG----UCUAGCU----CGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 25745 0.71 0.189158
Target:  5'- gGCgGCAGcacgcUGGGCGCGCUGCUGGGc -3'
miRNA:   3'- gCGgCGUCua---GCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 26229 0.71 0.17472
Target:  5'- uGCgCGCAGuuUUGcGCGCGUCGCCGAa -3'
miRNA:   3'- gCG-GCGUCu-AGCuCGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 27445 0.68 0.284757
Target:  5'- gGCCGCAGGcccuggCGcugguaugccAGCGCGCCGCgcacgcaccacgCGAGg -3'
miRNA:   3'- gCGGCGUCUa-----GC----------UCGUGCGGCG------------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 27707 0.66 0.370373
Target:  5'- gCGCCgGCAG--CG-GCuCGCCGCCGGu -3'
miRNA:   3'- -GCGG-CGUCuaGCuCGuGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 27764 0.74 0.116375
Target:  5'- gGCCGCcaacGGcAUCGAccugggcgaagGCAgCGCCGCCGAGg -3'
miRNA:   3'- gCGGCG----UC-UAGCU-----------CGU-GCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 27808 0.7 0.215552
Target:  5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3'
miRNA:   3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.