miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 1707 0.69 0.24504
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGUCUaGCuCGUGCGGCgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 29404 0.69 0.24504
Target:  5'- gGCCaGCAGAaucUUGGGCGCGuuGCCc-- -3'
miRNA:   3'- gCGG-CGUCU---AGCUCGUGCggCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 23338 0.69 0.232861
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 3877 0.69 0.226965
Target:  5'- uCGCUGUAGGcCGcGCugccguCGCCGCCGAa -3'
miRNA:   3'- -GCGGCGUCUaGCuCGu-----GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 32858 0.7 0.221196
Target:  5'- gGCCGCAGA-CG-GU-CGgCGCCGAGa -3'
miRNA:   3'- gCGGCGUCUaGCuCGuGCgGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 27808 0.7 0.215552
Target:  5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3'
miRNA:   3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 3739 0.7 0.199357
Target:  5'- aCGCCGguGGU-GGGCACgucgguGCCGCCGc- -3'
miRNA:   3'- -GCGGCguCUAgCUCGUG------CGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 31904 0.68 0.291851
Target:  5'- gGCCG-AGGcCGuGCGCGCUGCCGu- -3'
miRNA:   3'- gCGGCgUCUaGCuCGUGCGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 14061 0.68 0.298353
Target:  5'- gGCCGCaAGGUCGuGCcguucaacaagcaGCGCCGgcagaugaCCGAGu -3'
miRNA:   3'- gCGGCG-UCUAGCuCG-------------UGCGGC--------GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 37661 0.68 0.299083
Target:  5'- uCGCagacguGCAGAccgucgCGGGCAuCGCUGCCGAc -3'
miRNA:   3'- -GCGg-----CGUCUa-----GCUCGU-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 29047 0.67 0.306452
Target:  5'- uCGCCGUGGGcacCGAGuCAgGCgGCCGAc -3'
miRNA:   3'- -GCGGCGUCUa--GCUC-GUgCGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5734 0.67 0.313959
Target:  5'- uGUCGCacAGAUCGcccAGCGCGCCGggcagCGAGu -3'
miRNA:   3'- gCGGCG--UCUAGC---UCGUGCGGCg----GCUC- -5'
26786 5' -60.6 NC_005808.1 + 16149 0.67 0.313959
Target:  5'- uGCCG-AGGUCGAGCGCauCCGCgaacugcaCGAGg -3'
miRNA:   3'- gCGGCgUCUAGCUCGUGc-GGCG--------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 21831 0.67 0.313959
Target:  5'- aGCCGCGcGAugagUCGAGCGCGgCGCa--- -3'
miRNA:   3'- gCGGCGU-CU----AGCUCGUGCgGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 23938 0.67 0.313959
Target:  5'- gGCCGgGGG-CGGGCGcCGCCcCCGAu -3'
miRNA:   3'- gCGGCgUCUaGCUCGU-GCGGcGGCUc -5'
26786 5' -60.6 NC_005808.1 + 1128 0.67 0.324702
Target:  5'- uGCCGUcGAUCauGAGCAgcggccguuugcgcuCGCCGUCGAu -3'
miRNA:   3'- gCGGCGuCUAG--CUCGU---------------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 2954 0.67 0.327039
Target:  5'- gCGCgGCAcGUCGAGCACGUgaucgaugacagguUGCUGAu -3'
miRNA:   3'- -GCGgCGUcUAGCUCGUGCG--------------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 14026 0.67 0.337312
Target:  5'- uGCCGguGGcCGAcguGCGCGCCG-CGAu -3'
miRNA:   3'- gCGGCguCUaGCU---CGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 8435 0.67 0.345372
Target:  5'- gCGUCGCGGAacaUCG-GCGCGaugucggCGUCGAGg -3'
miRNA:   3'- -GCGGCGUCU---AGCuCGUGCg------GCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 16541 0.67 0.345372
Target:  5'- uCGCCgaGCGcAUgGAGCGCGCcCGCCGc- -3'
miRNA:   3'- -GCGG--CGUcUAgCUCGUGCG-GCGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.