miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 5317 0.68 0.2778
Target:  5'- gGCCGUAGGccgCGAGCACGUgGCg--- -3'
miRNA:   3'- gCGGCGUCUa--GCUCGUGCGgCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 27445 0.68 0.284757
Target:  5'- gGCCGCAGGcccuggCGcugguaugccAGCGCGCCGCgcacgcaccacgCGAGg -3'
miRNA:   3'- gCGGCGUCUa-----GC----------UCGUGCGGCG------------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 15090 0.68 0.284757
Target:  5'- gCGCCG-AGA---AGCugGCgGCCGAGg -3'
miRNA:   3'- -GCGGCgUCUagcUCGugCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 778 0.68 0.291851
Target:  5'- uGCCGguCAGAUCGGGC-CGCUGCg--- -3'
miRNA:   3'- gCGGC--GUCUAGCUCGuGCGGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 31904 0.68 0.291851
Target:  5'- gGCCG-AGGcCGuGCGCGCUGCCGu- -3'
miRNA:   3'- gCGGCgUCUaGCuCGUGCGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 28156 0.68 0.291851
Target:  5'- uGCCGgugguCAGAUCGAcCACGCCGuuGc- -3'
miRNA:   3'- gCGGC-----GUCUAGCUcGUGCGGCggCuc -5'
26786 5' -60.6 NC_005808.1 + 8632 0.68 0.291851
Target:  5'- cCGCUGCGGuggCGAGguCGCCgGCCu-- -3'
miRNA:   3'- -GCGGCGUCua-GCUCguGCGG-CGGcuc -5'
26786 5' -60.6 NC_005808.1 + 14061 0.68 0.298353
Target:  5'- gGCCGCaAGGUCGuGCcguucaacaagcaGCGCCGgcagaugaCCGAGu -3'
miRNA:   3'- gCGGCG-UCUAGCuCG-------------UGCGGC--------GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 37661 0.68 0.299083
Target:  5'- uCGCagacguGCAGAccgucgCGGGCAuCGCUGCCGAc -3'
miRNA:   3'- -GCGg-----CGUCUa-----GCUCGU-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 29047 0.67 0.306452
Target:  5'- uCGCCGUGGGcacCGAGuCAgGCgGCCGAc -3'
miRNA:   3'- -GCGGCGUCUa--GCUC-GUgCGgCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 13326 0.67 0.313959
Target:  5'- gCGgCGUAGGcuuUCG-GCAgguCGCCGCCGAa -3'
miRNA:   3'- -GCgGCGUCU---AGCuCGU---GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 23938 0.67 0.313959
Target:  5'- gGCCGgGGG-CGGGCGcCGCCcCCGAu -3'
miRNA:   3'- gCGGCgUCUaGCUCGU-GCGGcGGCUc -5'
26786 5' -60.6 NC_005808.1 + 16149 0.67 0.313959
Target:  5'- uGCCG-AGGUCGAGCGCauCCGCgaacugcaCGAGg -3'
miRNA:   3'- gCGGCgUCUAGCUCGUGc-GGCG--------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 21831 0.67 0.313959
Target:  5'- aGCCGCGcGAugagUCGAGCGCGgCGCa--- -3'
miRNA:   3'- gCGGCGU-CU----AGCUCGUGCgGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 5734 0.67 0.313959
Target:  5'- uGUCGCacAGAUCGcccAGCGCGCCGggcagCGAGu -3'
miRNA:   3'- gCGGCG--UCUAGC---UCGUGCGGCg----GCUC- -5'
26786 5' -60.6 NC_005808.1 + 24323 0.67 0.317001
Target:  5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3'
miRNA:   3'- gCGGCGUCUAG--------CUCG-UGCGG---------------CGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 1128 0.67 0.324702
Target:  5'- uGCCGUcGAUCauGAGCAgcggccguuugcgcuCGCCGUCGAu -3'
miRNA:   3'- gCGGCGuCUAG--CUCGU---------------GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 2954 0.67 0.327039
Target:  5'- gCGCgGCAcGUCGAGCACGUgaucgaugacagguUGCUGAu -3'
miRNA:   3'- -GCGgCGUcUAGCUCGUGCG--------------GCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 22072 0.67 0.329389
Target:  5'- gGUCGCGG-UCG-GCGCGCgGCuCGAu -3'
miRNA:   3'- gCGGCGUCuAGCuCGUGCGgCG-GCUc -5'
26786 5' -60.6 NC_005808.1 + 22903 0.67 0.337312
Target:  5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3'
miRNA:   3'- gCGGCGUcUAGCUCGU--GCGGCGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.