miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26786 5' -60.6 NC_005808.1 + 14061 0.68 0.298353
Target:  5'- gGCCGCaAGGUCGuGCcguucaacaagcaGCGCCGgcagaugaCCGAGu -3'
miRNA:   3'- gCGGCG-UCUAGCuCG-------------UGCGGC--------GGCUC- -5'
26786 5' -60.6 NC_005808.1 + 31904 0.68 0.291851
Target:  5'- gGCCG-AGGcCGuGCGCGCUGCCGu- -3'
miRNA:   3'- gCGGCgUCUaGCuCGUGCGGCGGCuc -5'
26786 5' -60.6 NC_005808.1 + 28156 0.68 0.291851
Target:  5'- uGCCGgugguCAGAUCGAcCACGCCGuuGc- -3'
miRNA:   3'- gCGGC-----GUCUAGCUcGUGCGGCggCuc -5'
26786 5' -60.6 NC_005808.1 + 8632 0.68 0.291851
Target:  5'- cCGCUGCGGuggCGAGguCGCCgGCCu-- -3'
miRNA:   3'- -GCGGCGUCua-GCUCguGCGG-CGGcuc -5'
26786 5' -60.6 NC_005808.1 + 778 0.68 0.291851
Target:  5'- uGCCGguCAGAUCGGGC-CGCUGCg--- -3'
miRNA:   3'- gCGGC--GUCUAGCUCGuGCGGCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 27445 0.68 0.284757
Target:  5'- gGCCGCAGGcccuggCGcugguaugccAGCGCGCCGCgcacgcaccacgCGAGg -3'
miRNA:   3'- gCGGCGUCUa-----GC----------UCGUGCGGCG------------GCUC- -5'
26786 5' -60.6 NC_005808.1 + 15090 0.68 0.284757
Target:  5'- gCGCCG-AGA---AGCugGCgGCCGAGg -3'
miRNA:   3'- -GCGGCgUCUagcUCGugCGgCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 5317 0.68 0.2778
Target:  5'- gGCCGUAGGccgCGAGCACGUgGCg--- -3'
miRNA:   3'- gCGGCGUCUa--GCUCGUGCGgCGgcuc -5'
26786 5' -60.6 NC_005808.1 + 30125 0.68 0.264294
Target:  5'- gGCCGCGcca-GAaCACGCCGCCGGc -3'
miRNA:   3'- gCGGCGUcuagCUcGUGCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 5898 0.68 0.264294
Target:  5'- uCGCCaGCGuGGU-GAGUGUGCCGCCGGGa -3'
miRNA:   3'- -GCGG-CGU-CUAgCUCGUGCGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 33279 0.69 0.257743
Target:  5'- cCGCCGCGccGA-CGuGCGCcgccagGUCGCCGAGg -3'
miRNA:   3'- -GCGGCGU--CUaGCuCGUG------CGGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 9902 0.69 0.257743
Target:  5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3'
miRNA:   3'- gCG-GCGUCuaGCUCGUGCGGCgGCUc -5'
26786 5' -60.6 NC_005808.1 + 31847 0.69 0.251326
Target:  5'- gGCCGaa-GUCGAGCGCGCCcuuGgCGAGc -3'
miRNA:   3'- gCGGCgucUAGCUCGUGCGG---CgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 29404 0.69 0.24504
Target:  5'- gGCCaGCAGAaucUUGGGCGCGuuGCCc-- -3'
miRNA:   3'- gCGG-CGUCU---AGCUCGUGCggCGGcuc -5'
26786 5' -60.6 NC_005808.1 + 1707 0.69 0.24504
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGUCUaGCuCGUGCGGCgGCUC- -5'
26786 5' -60.6 NC_005808.1 + 23338 0.69 0.232861
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGUcu--AGCU--CGu-GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 3877 0.69 0.226965
Target:  5'- uCGCUGUAGGcCGcGCugccguCGCCGCCGAa -3'
miRNA:   3'- -GCGGCGUCUaGCuCGu-----GCGGCGGCUc -5'
26786 5' -60.6 NC_005808.1 + 1943 0.7 0.221196
Target:  5'- uCGuCUGCGGGuucuggUCGAGCGCGCgGCCcuGGGg -3'
miRNA:   3'- -GC-GGCGUCU------AGCUCGUGCGgCGG--CUC- -5'
26786 5' -60.6 NC_005808.1 + 32858 0.7 0.221196
Target:  5'- gGCCGCAGA-CG-GU-CGgCGCCGAGa -3'
miRNA:   3'- gCGGCGUCUaGCuCGuGCgGCGGCUC- -5'
26786 5' -60.6 NC_005808.1 + 27808 0.7 0.215552
Target:  5'- aGCCGCAGcacguccUCGcGCGCGCUGCCc-- -3'
miRNA:   3'- gCGGCGUCu------AGCuCGUGCGGCGGcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.